Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1 181 2e-40
seq32 105 1e-17
>seq1
Length=1559860
Score = 181 bits (200), Expect = 2e-40
Identities = 460/690 (67%), Gaps = 30/690 (4%)
Strand=Plus/Plus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897
|| ||| || |||||||| |||| | | |||| ||| ||| | | || ||||||||||
Sbjct 377559 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGC-GGCTTGCGTGCGCAAGTAGTACATGC 377617
Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957
| ||||| || ||| || ||||||| | |||||| || | | |||| || | | |
Sbjct 377618 CAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGTTG 377677
Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016
|||| |||||||||||| ||||||||| |||||||| |||||| || || || |||
Sbjct 377678 GGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGAT-AAAGGCACCGCGGTCGGCG 377736
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC---------ACG 204067
||||| | | | ||||||||| ||||| ||||||||| || ||
Sbjct 377737 GCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACC 377796
Query 204068 TC-TCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAG 204126
|| | || ||||| || || | || |||||||||||| ||||| || |
Sbjct 377797 TCGCCGGGAATGTTGGGG---ATGT-------TCTGGATCGAGCCGTTCTCGGCAATGAT 377846
Query 204127 TCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186
| || || | | || ||||| |||| || || ||| | || ||
Sbjct 377847 GCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGG 377906
Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246
||||| || ||| || || || | ||| || | ||| | | | |||| ||| | ||
Sbjct 377907 GTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGG 377966
Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306
||||| |||||||||||| | |||||| | ||| |||||||||||||| || ||
Sbjct 377967 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAG 378026
Query 204307 GAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGT 204365
||||| |||||||| | |||| | | || |||| ||| || || ||| ||
Sbjct 378027 CAGCAGCGAGTTGCGAATCCCGTGCTCCTTGA-TCTGCTCCTTGAGGGAATCCCACTCCC 378085
Query 204366 GCA--TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423
|| ||| || || ||||| ||||||||| ||||| | |||||||| | | | ||
Sbjct 378086 ACAAGTCGGAC--GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGG 378143
Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483
|||||| |||| | || || ||||| | ||||||| ||| || | ||
Sbjct 378144 AGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAA 378203
Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTG 204513
|||| | ||| ||||||||||| |||||
Sbjct 378204 GGCGGCGTGGTAGATGGTCTCAAAAATCTG 378233
>seq32
Length=314566
Score = 105 bits (116), Expect = 1e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975
||| ||||| ||||||||| ||||| |||||||| || || |||| ||||| || |
Sbjct 225244 CAGCAGGCATGCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAA 225303
Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035
| | || || ||||||| || ||| ||||||||||| |||| ||| || ||||| ||
Sbjct 225304 GGTAAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACT 225363
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068
|| ||||| ||||| || || || || || ||
Sbjct 225364 GAAGAAGATGCCCTCGACAGCGGCGAAGGCAAC 225396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795153818417840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |