Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 181 2e-40 seq32 105 1e-17 >seq1 Length=1559860 Score = 181 bits (200), Expect = 2e-40 Identities = 460/690 (67%), Gaps = 30/690 (4%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 || ||| || |||||||| |||| | | |||| ||| ||| | | || |||||||||| Sbjct 377559 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGC-GGCTTGCGTGCGCAAGTAGTACATGC 377617 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| || ||| || ||||||| | |||||| || | | |||| || | | | Sbjct 377618 CAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGTTG 377677 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 |||| |||||||||||| ||||||||| |||||||| |||||| || || || ||| Sbjct 377678 GGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGAT-AAAGGCACCGCGGTCGGCG 377736 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC---------ACG 204067 ||||| | | | ||||||||| ||||| ||||||||| || || Sbjct 377737 GCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACC 377796 Query 204068 TC-TCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAG 204126 || | || ||||| || || | || |||||||||||| ||||| || | Sbjct 377797 TCGCCGGGAATGTTGGGG---ATGT-------TCTGGATCGAGCCGTTCTCGGCAATGAT 377846 Query 204127 TCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186 | || || | | || ||||| |||| || || ||| | || || Sbjct 377847 GCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGG 377906 Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246 ||||| || ||| || || || | ||| || | ||| | | | |||| ||| | || Sbjct 377907 GTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGG 377966 Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306 ||||| |||||||||||| | |||||| | ||| |||||||||||||| || || Sbjct 377967 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAG 378026 Query 204307 GAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGT 204365 ||||| |||||||| | |||| | | || |||| ||| || || ||| || Sbjct 378027 CAGCAGCGAGTTGCGAATCCCGTGCTCCTTGA-TCTGCTCCTTGAGGGAATCCCACTCCC 378085 Query 204366 GCA--TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423 || ||| || || ||||| ||||||||| ||||| | |||||||| | | | || Sbjct 378086 ACAAGTCGGAC--GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGG 378143 Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483 |||||| |||| | || || ||||| | ||||||| ||| || | || Sbjct 378144 AGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAA 378203 Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTG 204513 |||| | ||| ||||||||||| ||||| Sbjct 378204 GGCGGCGTGGTAGATGGTCTCAAAAATCTG 378233 >seq32 Length=314566 Score = 105 bits (116), Expect = 1e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975 ||| ||||| ||||||||| ||||| |||||||| || || |||| ||||| || | Sbjct 225244 CAGCAGGCATGCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAA 225303 Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035 | | || || ||||||| || ||| ||||||||||| |||| ||| || ||||| || Sbjct 225304 GGTAAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACT 225363 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 || ||||| ||||| || || || || || || Sbjct 225364 GAAGAAGATGCCCTCGACAGCGGCGAAGGCAAC 225396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153818417840