Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq31 147 2e-30 seq3 140 4e-28 seq25 123 3e-23 >seq31 Length=345369 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| || |||||| ||||| |||||||||| Sbjct 218307 TGCCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 218248 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || |||| ||||||||||||||||| || || | ||||||||||||| | Sbjct 218247 CCAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGG 218188 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCC 46543 | | | |||||||| |||||| ||||| ||| | || | |||| ||| || Sbjct 218187 GAATCCCTTCCTTGTCTTGAATCTTCGACTTGA-CGTTGTCAATGGTGTCTGACGACTCA 218129 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||| ||||| |||||||| || || |||||||||||||| Sbjct 218128 ACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || ||||| ||||| |||||||||| || ||||| | || ||| Sbjct 217831 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 217772 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || || || || ||||||||||||||||||| ||| | || ||||||||| Sbjct 217771 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 217712 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || ||| ||||| | | | ||||| || ||||| || | |||||||| || Sbjct 217711 ATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 217652 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||||||||| Sbjct 217651 CCGGTGAGGGTCTTTACGAAGATTTGCAT 217623 >seq3 Length=1259731 Score = 140 bits (154), Expect = 4e-28 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || |||||||| ||||| |||||||||| || ||||| | Sbjct 602978 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 603037 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||| || || || | ||||||||||||| || | || ||||||| Sbjct 603038 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 603097 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | |||||| || ||||| || | |||||| Sbjct 603098 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 603157 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || ||||| || || || || || || ||||| |||| Sbjct 603158 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 603197 >seq25 Length=408197 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || || |||||||||| || || || | || || ||||||||||| || || | Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 312530 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||| || || || || | ||||||||| ||||||||||| || || |||| Sbjct 312531 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 312590 Query 46584 A 46584 | Sbjct 312591 A 312591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237417898280