Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq31 147 2e-30
seq3 140 4e-28
seq25 123 3e-23
>seq31
Length=345369
Score = 147 bits (162), Expect = 2e-30
Identities = 172/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||||| |||||| |||| || |||||| ||||| ||||||||||
Sbjct 218307 TGCCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 218248
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || || |||| ||||||||||||||||| || || | ||||||||||||| |
Sbjct 218247 CCAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGG 218188
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCC 46543
| | | |||||||| |||||| ||||| ||| | || | |||| ||| ||
Sbjct 218187 GAATCCCTTCCTTGTCTTGAATCTTCGACTTGA-CGTTGTCAATGGTGTCTGACGACTCA 218129
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| |||||| ||||| |||||||| || || ||||||||||||||
Sbjct 218128 ACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || ||||| ||||| |||||||||| || ||||| | || |||
Sbjct 217831 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 217772
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||| || || || || ||||||||||||||||||| ||| | || |||||||||
Sbjct 217771 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 217712
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|| ||| ||||| | | | ||||| || ||||| || | |||||||| ||
Sbjct 217711 ATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 217652
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || || |||||||||||
Sbjct 217651 CCGGTGAGGGTCTTTACGAAGATTTGCAT 217623
>seq3
Length=1259731
Score = 140 bits (154), Expect = 4e-28
Identities = 163/220 (74%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| |||| || |||||||| ||||| |||||||||| || ||||| |
Sbjct 602978 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 603037
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||| || || || | ||||||||||||| || | || |||||||
Sbjct 603038 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 603097
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| || ||||| || | ||||||
Sbjct 603098 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 603157
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598
|| || ||||| || || || || || || ||||| ||||
Sbjct 603158 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 603197
>seq25
Length=408197
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| || || |||||||||| || || || | || || ||||||||||| || || |
Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| ||||||||||||| || | || |||||||||| |||||| ||||| |
Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 312530
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||| || || || || | ||||||||| ||||||||||| || || ||||
Sbjct 312531 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 312590
Query 46584 A 46584
|
Sbjct 312591 A 312591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565237417898280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |