Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq32 199 4e-46 seq3 147 2e-30 seq31 127 2e-24 seq25 93.3 4e-14 >seq32 Length=314566 Score = 199 bits (220), Expect = 4e-46 Identities = 354/506 (70%), Gaps = 14/506 (3%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || ||||| || || ||||||||||| || || || || ||| ||| || | Sbjct 224960 TTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTC 225019 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720 ||||||||| || || || ||||| ||||| ||| | |||| || | || Sbjct 225020 TCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGAG-AG--CAACC 225076 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 | ||| | |||||| ||||| |||||||||||| ||| | | | || | || || Sbjct 225077 AACAGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGA 225136 Query 132781 AGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 ||| ||||| ||||| || || || || || |||||| |||| ||| || ||||||| Sbjct 225137 AGAGCGCAC-GGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGAT 225195 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899 |||||| | | | ||| | | |||| | ||| | || || ||| || Sbjct 225196 GATTTCTTGGATGATTTGCTTGCTTGCTCTTTGCTTGAGATGAGAGTGCAGCAGGCATGC 225255 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 ||||||| ||||| |||||||| | ||| ||||||||||| ||| || | ||||| Sbjct 225256 AAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGG 225315 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGA--AAAGAAGACG 133017 |||||||||||| || ||||||||||| |||| ||||| ||| | | ||||||| | Sbjct 225316 CATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAA--TGCACCACTGAAGAAGATG 225373 Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA-CGTGGCTTCTTTGCTGGCGAT 133076 |||||||| || ||||| || |||| || | | |||| | | || ||| || | ||| Sbjct 225374 CCCTCGACAGCGGCGAAGGCAACCAATCGTTGGGCGAAGCTAGACTCCTTGTCTTG-GAT 225432 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTT 133102 |||||| | ||||| |||||||||| Sbjct 225433 CCAGCGGATGGCCCAGTCGGCCTTTT 225458 Score = 125 bits (138), Expect = 7e-24 Identities = 193/275 (70%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || |||||||| | |||||| | || || || | |||||||| ||| || || Sbjct 225590 TACGTGTCGATCAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAAC 225649 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| || || || || || |||||||| || ||| ||||| ||||| ||| Sbjct 225650 CCGTAGAAACAACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTT 225709 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 |||||||||||||| || ||| || || || |||| | ||| ||||||| Sbjct 225710 TCGTTGACGATGCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTT 225769 Query 133348 TCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 || | |||||||| ||| | ||||||| || |||||||||||||| | ||| ||| Sbjct 225770 TCATCGTCGTTCAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCG 225829 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || ||||| || || |||||||| Sbjct 225830 GCTGTCCAGAAAGAAGCCTCAGCCTTCTTGTACAT 225864 >seq3 Length=1259731 Score = 147 bits (162), Expect = 2e-30 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || ||||||||| |||| || ||| | Sbjct 603195 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 603136 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || |||| ||||| ||||| || ||| ||||| Sbjct 603135 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 603076 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | || ||||| ||||| || || | |||||||| ||||||| Sbjct 603075 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTAC 603016 Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||||||| ||||| ||| || ||||| ||||||||||| || | || ||| || Sbjct 603015 AACATCCAGAAGGAGAGC-ACCCTGCACTTGGTGCTGCGCCTGCGCGGTGGCGGC 602962 >seq31 Length=345369 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| | || || ||| | || Sbjct 217851 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 217910 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| ||||| ||||| || || ||||||| Sbjct 217911 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 217970 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || |||||||| || || |||| |||||||| |||||||||| Sbjct 217971 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 218030 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || ||| | || ||||| || | |||||| Sbjct 218031 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGGC 218078 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || ||||| || || ||||||||| |||| || ||| | | Sbjct 217623 ATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCT 217682 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || ||||| | ||||| ||||| || || ||||||| Sbjct 217683 GACACTATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCGACCAG 217742 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || |||||||| || || | |||||||| |||||||||| Sbjct 217743 CAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACTACAAC 217802 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||| |||| || || || | ||||| Sbjct 217803 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGG 217849 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || ||||| ||||| ||||| | || || ||| | | Sbjct 218079 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 218138 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| || || |||||| ||||||| Sbjct 218139 GACACCATTGACAACG-TCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCA 218197 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || |||| || || | ||||||||| Sbjct 218198 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAA 218257 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| ||||||||||| | | |||||| Sbjct 218258 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTCCGCGGCGGC 218306 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || |||||||| |||| || ||| | | Sbjct 218307 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 218366 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || ||||| | ||||| ||||| ||||| | || || Sbjct 218367 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 218426 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || || || ||||| || || | | | ||||| |||||||||| Sbjct 218427 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 218486 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || |||||||| ||||| |||| ||||||| || || | || |||| Sbjct 218487 ATTCAAAAGGAGTCGACGTTGCACCTGGTGCTCCGCCTGCGTGGTGGCC 218535 >seq25 Length=408197 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 || || || || || |||||||| |||||||| |||| |||||| || |||||| | Sbjct 312591 TTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGATC 312532 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || || ||||||| ||||| | Sbjct 312531 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTTG 312472 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| |||||||| || | || ||||| |||||||||||| || ||| Sbjct 312471 ATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTGGCCGACTACAACATTCAGAAG 312412 Query 38433 G 38433 | Sbjct 312411 G 312411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171930949760