Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 196 6e-45 seq19 104 3e-17 >seq1 Length=1559860 Score = 196 bits (216), Expect = 6e-45 Identities = 458/690 (66%), Gaps = 11/690 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || ||||| | ||||| ||||||||||| Sbjct 79146 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACCTCAAAGATACCC 79205 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | || |||||||| |||||||| |||||||| ||||| | ||| Sbjct 79206 TCCTCGATGGTCAGGAGAGACACATCAAAGGTACCACCGCCCAGGTCGAAAATCAAGACG 79265 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| |||||||| || || || || || || || || || Sbjct 79266 TTGCGCTCACCCTCGACCTTCTTGTCGAGACCATAGGCAATGGCGGCAGCAGTAGGCTCG 79325 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || |||||||| || ||| || || ||||| | || ||||| || || || || Sbjct 79326 TTGATAATACGGAGCACGTTGAGACCGGCAATGAGACCGGCGTCTTTGGTAGCCTGACGC 79385 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || |||||||| ||||| || ||||| |||| |||| | | ||||| Sbjct 79386 TGAGAGTCATTGAAGTAGGCAGGGACAGTGACGACAGCGTTTGTGATGGTAGTGCCGAGG 79445 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || | || ||| ||||| |||| ||| || || || || || | | | Sbjct 79446 TAGCTCTCGGCAGTCTCACGCATCTTGGTGAGAATCATGGAAGAGATTTCCTCGGGGGTA 79505 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC----C 7872 || || || || || || || || || || | | ||| || || || | | Sbjct 79506 AAGGTCTTGGTCTCGCCCTTGAACTCGACCTCGACAAGGGGCTT----GCCGCCCTTGTC 79561 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | ||| | | | | ||||| || | || |||| ||| ||||| Sbjct 79562 GCTGATGATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGAACCTCGGCGTCGTTGAACTT 79621 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | || || | ||||| || || || || ||||| | ||||||||||| || || Sbjct 79622 GCGGCCAATCAATCGCTTGGCGTCGAAGACAGTGTTGTGAGGGTTCATGGCGACCTGATT 79681 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| || || || ||||| ||||| || | || || || || ||| |||| || || Sbjct 79682 CTTGGCGGCATCACCGATCAGACGCTC---GGTGTCAGTGAAGGCAACGAACGAAGGAGT 79738 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 ||||| || || ||||| || || || || || || || | | ||| ||||| Sbjct 79739 AGTTCGGTTACCCTGGTCATTGGCGATGATGTCGCATCGATCCTCGCGGAAGATACCGAC 79798 Query 8113 GCACGAATACGTTGTTCCTAAATCAATACC 8142 || |||||||| || || | || ||||| Sbjct 79799 ACATGAATACGTGGTACCCAGGTCGATACC 79828 >seq19 Length=546703 Score = 104 bits (114), Expect = 3e-17 Identities = 229/339 (68%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || |||||||| || | || ||||| || ||| | ||| || ||||| | ||| Sbjct 332745 ATCAAAGTCTTCACCGCCAAGATGCGTATCACCGTTGGTGGATTTCACCTCAAAAACACC 332686 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA-TGAGTA 7574 | || | || | |||| |||||| ||||| ||||| || || | | || | | Sbjct 332685 GTTCTGGATCTCCAAGATGGAAATATCAAAGGTACCGCCACCGAGATCGTAGACTGCG-A 332627 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || | ||| | || ||| |||||||| || |||| || || || || || | Sbjct 332626 CGACACTGTCGGCCTC------CTTCTCGAGACCATAAGCGAGGGCTGCGGCAGTAGGCT 332573 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTG 7692 |||| | || || ||| ||| ||||||||||| ||| | |||||||| || ||| Sbjct 332572 CATTGACAACGCGGAGAACGTTGAGGCCAGCAAT--TTGACCAGCATCTTTGGTGCTTTG 332515 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||| || | |||||| |||||||| ||||| || ||||| || | | |||| ||| Sbjct 332514 TCGCTGAGCATCGTTGAAGTAGGCAGGGACAGTGACGACAGCATTCTTGACGGGCTTGGA 332455 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 ||| || | || || | || ||||| || | ||||| Sbjct 332454 GAGGTAAGCCTCGGCAGTCTCCTTCATCTTATTGAGAAC 332416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131696456760