Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1 196 6e-45
seq19 104 3e-17
>seq1
Length=1559860
Score = 196 bits (216), Expect = 6e-45
Identities = 458/690 (66%), Gaps = 11/690 (2%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||||||||| || || || ||||| | ||||| |||||||||||
Sbjct 79146 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACCTCAAAGATACCC 79205
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || ||| | | | || |||||||| |||||||| |||||||| ||||| | |||
Sbjct 79206 TCCTCGATGGTCAGGAGAGACACATCAAAGGTACCACCGCCCAGGTCGAAAATCAAGACG 79265
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| || | || ||||| |||||||| || || || || || || || || ||
Sbjct 79266 TTGCGCTCACCCTCGACCTTCTTGTCGAGACCATAGGCAATGGCGGCAGCAGTAGGCTCG 79325
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| |||||||| || ||| || || ||||| | || ||||| || || || ||
Sbjct 79326 TTGATAATACGGAGCACGTTGAGACCGGCAATGAGACCGGCGTCTTTGGTAGCCTGACGC 79385
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || || || |||||||| ||||| || ||||| |||| |||| | | |||||
Sbjct 79386 TGAGAGTCATTGAAGTAGGCAGGGACAGTGACGACAGCGTTTGTGATGGTAGTGCCGAGG 79445
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || | || ||| ||||| |||| ||| || || || || || | | |
Sbjct 79446 TAGCTCTCGGCAGTCTCACGCATCTTGGTGAGAATCATGGAAGAGATTTCCTCGGGGGTA 79505
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC----C 7872
|| || || || || || || || || || | | ||| || || || | |
Sbjct 79506 AAGGTCTTGGTCTCGCCCTTGAACTCGACCTCGACAAGGGGCTT----GCCGCCCTTGTC 79561
Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932
| ||| | ||| | | | | ||||| || | || |||| ||| |||||
Sbjct 79562 GCTGATGATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGAACCTCGGCGTCGTTGAACTT 79621
Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992
| || || | ||||| || || || || ||||| | ||||||||||| || ||
Sbjct 79622 GCGGCCAATCAATCGCTTGGCGTCGAAGACAGTGTTGTGAGGGTTCATGGCGACCTGATT 79681
Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052
||| || || || ||||| ||||| || | || || || || ||| |||| || ||
Sbjct 79682 CTTGGCGGCATCACCGATCAGACGCTC---GGTGTCAGTGAAGGCAACGAACGAAGGAGT 79738
Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112
||||| || || ||||| || || || || || || || | | ||| |||||
Sbjct 79739 AGTTCGGTTACCCTGGTCATTGGCGATGATGTCGCATCGATCCTCGCGGAAGATACCGAC 79798
Query 8113 GCACGAATACGTTGTTCCTAAATCAATACC 8142
|| |||||||| || || | || |||||
Sbjct 79799 ACATGAATACGTGGTACCCAGGTCGATACC 79828
>seq19
Length=546703
Score = 104 bits (114), Expect = 3e-17
Identities = 229/339 (68%), Gaps = 12/339 (4%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||| || |||||||| || | || ||||| || ||| | ||| || ||||| | |||
Sbjct 332745 ATCAAAGTCTTCACCGCCAAGATGCGTATCACCGTTGGTGGATTTCACCTCAAAAACACC 332686
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA-TGAGTA 7574
| || | || | |||| |||||| ||||| ||||| || || | | || | |
Sbjct 332685 GTTCTGGATCTCCAAGATGGAAATATCAAAGGTACCGCCACCGAGATCGTAGACTGCG-A 332627
Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
|| | ||| | || ||| |||||||| || |||| || || || || || |
Sbjct 332626 CGACACTGTCGGCCTC------CTTCTCGAGACCATAAGCGAGGGCTGCGGCAGTAGGCT 332573
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTG 7692
|||| | || || ||| ||| ||||||||||| ||| | |||||||| || |||
Sbjct 332572 CATTGACAACGCGGAGAACGTTGAGGCCAGCAAT--TTGACCAGCATCTTTGGTGCTTTG 332515
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
||| || | |||||| |||||||| ||||| || ||||| || | | |||| |||
Sbjct 332514 TCGCTGAGCATCGTTGAAGTAGGCAGGGACAGTGACGACAGCATTCTTGACGGGCTTGGA 332455
Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791
||| || | || || | || ||||| || | |||||
Sbjct 332454 GAGGTAAGCCTCGGCAGTCTCCTTCATCTTATTGAGAAC 332416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635131696456760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |