Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 205 1e-47 seq32 93.3 5e-14 seq14 93.3 5e-14 >seq1 Length=1559860 Score = 205 bits (226), Expect = 1e-47 Identities = 1009/1583 (64%), Gaps = 35/1583 (2%) Strand=Plus/Minus Query 111526 AGAGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAA 111585 ||||||||| | ||| | || |||||| ||||||| || ||| | || |||| | Sbjct 379411 AGAGAGACTTCAACTATCAGTACTTTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGA 379352 Query 111586 GACTGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTA 111645 ||||| || | | ||| || ||| ||||| ||||||| || || |||| | Sbjct 379351 AGCTGGACGGCAAGATTGTCGAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCA 379292 Query 111646 TCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGT 111705 || || || | ||||| || |||| || ||| || |||||| || | | Sbjct 379291 TCTGGGGAGACAACATTGAGCGCGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCT 379232 Query 111706 TCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTT 111765 ||| |||||| |||| |||||||||||||| || || || || | ||| | Sbjct 379231 TCACCCACGCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGT 379172 Query 111766 GTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAAT 111825 | ||||| | | | ||||| || ||| | ||||| |||| |||||||| | Sbjct 379171 GCTTCCTCGTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTT 379112 Query 111826 GTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCA 111885 | ||| || || || ||| || |||||||| || || |||| | | || | Sbjct 379111 GCGCCATGATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTA 379052 Query 111886 ACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 111945 | || ||| || || || || || | || | |||| ||||| || | Sbjct 379051 CCGGATCCTACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAG 378992 Query 111946 TATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC--GCAA--GGGATCTATC 112001 | || ||| ||| || | || || |||||| || | | || | ||| | || Sbjct 378991 TCTTCAACAACACTGCCAGATACGTCGACCAAGGCGG-CAACAAGCGACCGGGCGCCTTC 378933 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || |||| || ||||| |||||||| ||| || | || |||||||| | | ||| Sbjct 378932 GCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAAC 378873 Query 112062 CAAGGTGATGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATC 112119 || || | ||||| | |||| | ||||| |||||| || || ||||| || || | Sbjct 378872 CACGGCAAGGAGGAAGTCCGCGCT--CGCGACCTCTTCCTTGCGCTGTGGATCCCCGACC 378815 Query 112120 TCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCA 112178 ||||||||||| | || ||| ||| |||| | ||| | ||| | || || || || || Sbjct 378814 TCTTCATGAAGCGTGTCGAGAAGAATGGCGACTGGACCCTCATGTGCCCCAACGAATGC- 378756 Query 112179 CCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAA 112238 || || ||| |||| | || || |||||||| || | || |||||||||| Sbjct 378755 CCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTGTATGAAAAGTACGAGCGC 378696 Query 112239 GAAAGTCG-GGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGT 112296 ||| | || ||| | ||| | | || | || | ||||| | | || ||| || Sbjct 378695 GAAGGCCGTGGCCGC-AAGACAATCCGCGC-CCAGAAGCTGTGGTACTCGATCCTCGAGG 378638 Query 112297 CTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTA 112356 |||| ||||||||||| | || | |||||| ||||| || || ||| ||||| | Sbjct 378637 CTCAGACCGAGACTGGCAACCCCTTTATGCTGTACAAGGATCATTGCAACAGGAAGAGCA 378578 Query 112357 ATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTA 112416 | || ||||| ||||| || || ||||||||||| || || || | || | Sbjct 378577 ACCAGAAGAACTTGGGAACCATTCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACT 378518 Query 112417 CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGG 112476 | | | || ||| || || || ||||| || || | || || ||| | ||||| Sbjct 378517 CGGCCCCCGACGAGGTTGCCGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTTGTGG 378458 Query 112477 ATCCAGAGACAAAGACA--TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCAC 112534 | | ||| ||| || | || | |||| || ||||| || || || Sbjct 378457 A--CTACGACCAAGGCAAGTACGACTTCCAAAAGCTGCACGACGTCACCCGCGTGGTTGT 378400 Query 112535 AAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATC 112594 ||| || |||| | || || || |||||||| | || || || Sbjct 378399 CCGAAATCTCAACAAGATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCAACAG 378340 Query 112595 TAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654 || ||| | || ||||| |||||| ||||||| ||||| | || || | ||| || Sbjct 378339 CAACATGCGGCATCGTCCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTTCCTTGC 378280 Query 112655 TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGAC 112714 |||| | ||||| || ||| || || | || || || |||||||| Sbjct 378279 GCTTCGCATGCCCTTTGAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATTTTTGAGAC 378220 Query 112715 AATGTATCACGCCGCTCTTGA-GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATG 112773 || || |||||||| ||||| |||| |||| |||| ||| || ||||| || Sbjct 378219 CATCTACCACGCCGC-CTTGACGGCGTCGGTGGAGCTGGCCAAGGAGGAGGGTCCCTACT 378161 Query 112774 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 112833 || || |||| ||||| || || |||| | || || ||||| |||| |||| ||| Sbjct 378160 CCACGTTCAAGGGATCTCCGGCCTCTGAAGGCATCCTGCAGTTTGACATGT-GGAACGTG 378102 Query 112834 A----GACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGT 112889 | | || | ||| | || ||||| | |||||||| | ||||||||| | || Sbjct 378101 ACGCCGTCCGA-CTT--GTGGGAGTGGGATTCCCTCAAGGAGCAGATCAAGGAGCACGGG 378045 Query 112890 CTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 112949 |||| ||| || || | || || ||||| || || ||||| | || || |||| Sbjct 378044 ATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTCTGGGC 377985 Query 112950 AATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGA 113009 || || || ||||| || ||||||||| | ||||| || | | || | ||| ||||| Sbjct 377984 AACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGGCGGGC 377925 Query 113010 GAGTTTGTGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG 113066 ||||| | | |||||| || |||| |||| ||| || || ||||| ||| Sbjct 377924 GAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGAT---CTCGTCGACATGGGTCTGTGG 377868 Query 113067 TCCAAGGATATGAAGGATCTCAT 113089 || | | |||||| ||| ||| Sbjct 377867 TCAGACGCCATGAAGAATCGCAT 377845 >seq32 Length=314566 Score = 93.3 bits (102), Expect = 5e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAG 102261 ||| ||||| ||||||||| |||| | ||| ||| | || | ||||||||||||||| | Sbjct 225382 TGTCGAGGGCATCTTCTTCAGTGGTGCATTC-GCGTCCATCTTTTGGCTCAAGAAGCGCG 225324 Query 102262 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 102321 | |||||||| || || |||||| ||||| || || || ||||||||||| | ||| Sbjct 225323 GCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTGACGAGGGTTTGCACA 225264 Query 102322 AAGAGTTTGC 102331 || ||||| Sbjct 225263 CCGACTTTGC 225254 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/122 (75%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||| || |||||| |||| || || ||||||||| |||| ||||| | || | || Sbjct 225837 TGGACAGCCGAAGAGATAGACCTGTCCAAGGATTTGCACGACTGGAATAATCGCCTGAAC 225778 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || |||||||| | ||||| ||||| ||||||||||||||| || ||||| || Sbjct 225777 GACGATGAAAAGTATTTCATTTCTCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATC 225718 Query 101934 GT 101935 || Sbjct 225717 GT 225716 >seq14 Length=615434 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||| || || || || ||||||| ||||||||| ||||| ||| | | |||| || Sbjct 203751 GGCGTCGATTTCGTCGATGAAGATGATGCATGGAGCATTTTTGCGGCCCTCGGCAAACAG 203810 Query 16124 ATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA- 16180 || | || | ||| || || ||||| |||||||| ||||| || | || || Sbjct 203811 GTCTCTGACTC--TTGACGGACCAACACCGACAAACATTTCCACGAATTCTGATCCGCTC 203868 Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 || || | ||| || || || || || ||| ||||| |||||||| ||||| || Sbjct 203869 ACGCTGAA-GAACGGTACGCCGGACTCGCCAGCAGTGGCTTTTGCGAGAAGCGTCTTTCC 203927 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||||||| ||| ||||||| ||| || || || ||||||||||| Sbjct 203928 AGTACCTGGAGGACCAGCGAGGATGGCGCCGCGGGGTATCTTGGCGCC 203975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741321460080