Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14 87.8 2e-12 >seq14 Length=615434 Score = 87.8 bits (96), Expect = 2e-12 Identities = 180/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||| || || || || ||||||| || ||||| ||||| |||| | |||| || Sbjct 203751 GGCGTCGATTTCGTCGATGAAGATGATGCATGGAGCATTTTTGCGGCCCTCGGCAAACAG 203810 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9489 || | || ||| | || ||||| |||||||| ||||| || | || || || Sbjct 203811 GTCTCTGACTCTTGACGGACCAACACCGACAAACATTTCCACGAATTCTGATCCGCTCAC 203870 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 || | ||| || || || || || ||| ||||| |||||||| ||||| || | Sbjct 203871 GCTGAA-GAACGGTACGCCGGACTCGCCAGCAGTGGCTTTTGCGAGAAGCGTCTTTCCAG 203929 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 9606 ||||||| ||| ||||||| ||| || || || ||||||||||| |||| | || | Sbjct 203930 TACCTGGAGGACCAGCGAGGATGGCGCCGCGGGGTATCTTGGCGCCCAGCTTCTCGAACT 203989 Query 9607 ATCTCTCAGGTTGCTTGAGAAA 9628 |||| || |||||||| || Sbjct 203990 ---TCTCCGGCTGCTTGAGGAA 204008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979774908360