Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq31 109 4e-19
seq3 109 4e-19
seq25 93.3 3e-14
>seq31
Length=345369
Score = 109 bits (120), Expect = 4e-19
Identities = 154/214 (72%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||| |||| ||| ||| ||||| ||||| ||||| | ||| | || |||| ||
Sbjct 217832 AACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTC 217773
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||||| || ||||| || | || |||||||| |||| | |||||||||||
Sbjct 217772 GAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 217713
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
||| ||| ||||| || | ||||| ||| | ||| || |||| ||| ||||
Sbjct 217712 AATTTTCGACTTGAC--AT--TGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGG 217657
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| ||||| ||||| || ||||| |||||
Sbjct 217656 TCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 217623
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| | | ||||| | || ||
Sbjct 218287 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCCTCG 218228
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || |||||||| || ||||| |||||||| | || | ||| |||||||| |
Sbjct 218227 AGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCTTGA 218168
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| |||||| | || | || | |||||| || | || || ||||||
Sbjct 218167 ATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTTTTT 218108
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| || ||||| |||||||| |||||
Sbjct 218107 CCCGTCAGTGTCTTGACAAAGATTTGCAT 218079
Score = 87.8 bits (96), Expect = 1e-12
Identities = 139/197 (71%), Gaps = 8/197 (4%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||| ||||| ||||| | ||| | || | || || || ||||| || |||||
Sbjct 218042 TTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAA 217983
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | ||||||||||| |||| | ||||||||||| || ||| ||||| |
Sbjct 217982 GATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTGAC--A 217925
Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
| | ||||| || | ||| || || | ||| ||||| || || ||||| ||||
Sbjct 217924 T--TGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCT 217867
Query 34966 TCACAAAGATCTGCATA 34982
| || ||||||||||||
Sbjct 217866 TGACGAAGATCTGCATA 217850
>seq3
Length=1259731
Score = 109 bits (120), Expect = 4e-19
Identities = 155/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||||| || ||||| ||||| ||||| | ||| | || |||| ||
Sbjct 602984 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCG 603043
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || ||||| |||||||| | || | |||||||||||
Sbjct 603044 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 603103
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || | ||| || |||| ||| |||||
Sbjct 603104 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGT 603159
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| |||||||| ||||| || || |||||||| ||
Sbjct 603160 CTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 603195
>seq25
Length=408197
Score = 93.3 bits (102), Expect = 3e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||||||||| ||||| | ||| |||| |||| |||||||| || || ||||| ||
Sbjct 312413 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 312472
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
| || |||||||| | || | ||||||||||| ||||| ||||| |
Sbjct 312473 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 312532
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972
|||| || || ||| || |||| || ||||| || ||||| || |||||||||||
Sbjct 312533 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 312591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633050050392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |