Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq31 104 2e-16
seq1 100 2e-15
>seq31
Length=345369
Score = 104 bits (114), Expect = 2e-16
Identities = 135/184 (73%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351
||| ||||| || ||||| ||||| ||| ||||| || || || ||||| || ||||
Sbjct 218489 AATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCG 218430
Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411
||||||||||||||||| || || || ||||||||||| || || ||||| ||
Sbjct 218429 CTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGT 218370
Query 563412 ATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470
||||| || | || ||||| || | || || || || || || || |||||||| |
Sbjct 218369 ATCAG-ACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCT 218311
Query 563471 GCAT 563474
||||
Sbjct 218310 GCAT 218307
>seq1
Length=1559860
Score = 100 bits (110), Expect = 2e-15
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||| || || || || |||||||| || ||||| ||||| ||||| || || | |||
Sbjct 79414 ACTGTCCCTGCCTACTTCAATGACTCTCAGCGTCAGGCTACCAAAGACGCCGGTCTCATT 79355
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || || || || || ||||||||||| || ||||||||||| || |||| |||||
Sbjct 79354 GCCGGTCTCAACGTGCTCCGTATTATCAACGAGCCTACTGCTGCCGCCATTGCCTATGGT 79295
Query 550529 CTTGATAA 550536
|| || ||
Sbjct 79294 CTCGACAA 79287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029288649053110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |