Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq31 143 2e-29
seq25 89.7 4e-13
>seq31
Length=345369
Score = 143 bits (158), Expect = 2e-29
Identities = 160/214 (75%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| | ||||||||| ||||| || || || ||||| ||||| | || | | |||| ||
Sbjct 217832 AACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTC 217773
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
| || ||||| ||||| ||||| ||||| || |||||||| ||||| || || |||||
Sbjct 217772 GAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 217713
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|||||| || ||| | || | ||||||||| | ||||| || || |||| || ||
Sbjct 217712 AATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTT 217653
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
||||| | || ||||| || || |||||||||
Sbjct 217652 TCCGGTGAGGGTCTTTACGAAGATTTGCATGGTT 217619
Score = 118 bits (130), Expect = 8e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332
|| || || ||||| || ||||| ||||| | ||||| |||| || | ||||||||
Sbjct 218503 GTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCA 218444
Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392
||||| || | ||||| ||||| || |||||||| || || ||||||||||| ||
Sbjct 218443 GCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGACTTC 218384
Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452
||| | || | || ||||||| ||||| || || |||| || || ||||| | ||
Sbjct 218383 ACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTC 218324
Query 101453 TTTACAAATATCTGCATG 101470
|| || || |||||||||
Sbjct 218323 TTGACGAAAATCTGCATG 218306
>seq25
Length=408197
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341
|| || || ||||| ||||| | |||| | |||| |||| ||||| || ||||| |||
Sbjct 312413 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 312472
Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401
|||||||| || ||||| || ||||| || || || || || || || ||| | ||
Sbjct 312473 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 312532
Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460
| ||||| || | || || || || |||| || ||||| || | || || |||||
Sbjct 312533 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 312591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396277728679623
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |