Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1 322 9e-83
seq32 120 6e-22
>seq1
Length=1559860
Score = 322 bits (356), Expect = 9e-83
Identities = 854/1286 (66%), Gaps = 55/1286 (4%)
Strand=Plus/Plus
Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474
||||| ||| |||||||||||||||||||| ||| |||||| || ||| | |||||||
Sbjct 378198 CGTCAAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAG-CTCGCGAGCCTCGG 378256
Query 221475 GAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534
|||| |||||||| || ||| | ||| ||||||||| || || || |||| ||
Sbjct 378257 GAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACAC 378316
Query 221535 CGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592
| ||||| | || | | ||||| | ||| |||||| | ||||| || ||||||
Sbjct 378317 CAATGGGACGATGCCGCATGTTGCTGTTGCGT--GCTTCTTGGACGGGGTAGTGGTTGAC 378374
Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652
|||||| | |||||||| || | ||| |||||| ||| | | || |
Sbjct 378375 GTCGATGATCTTGTTGAGATTTCG------GAC---AACCACGCGGGTGACGTCGTGCAG 378425
Query 221653 ATT---GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709
|| ||| | ||| ||| ||||| | |||||||| ||| |||||||
Sbjct 378426 CTTTTGGAAGTCGTACTTGCCTTGGTCGTAG------TCCACAAAGGCGGGCAGGGCAAG 378479
Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769
| ||| ||||| || ||||| |||||||| | | |||| || ||||| || ||
Sbjct 378480 GGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCA 378539
Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829
||||||| || ||||| |||| || || || || ||| | ||| | ||
Sbjct 378540 GAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATC 378599
Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889
|||||| ||||||||||| ||||||||| ||||||| | || ||| || ||| ||
Sbjct 378600 CTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAG 378659
Query 221890 TTCTCTGG-CGCTCACCGTCCTCTTGAC------TGCACCCTCGGTCTTTTCATACCCGG 221942
| ||||| ||| | ||| | | | | | | |||| ||||||||||
Sbjct 378660 CT-TCTGGGCGCGGATTGTCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATAC---- 378714
Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002
| ||| | |||||| || ||||| ||| | || || || || | ||| |
Sbjct 378715 ---AAAGCCT--CAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGC 378769
Query 222003 ACATCAGACTCCAGT-GC--TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCC 222059
|||| || |||||| || || || || ||| | || |||||||||||| |||||||
Sbjct 378770 ACATGAGGGTCCAGTCGCCATTCTTCTC---GACACGCTTCATGAAGAGGTCGGGGATCC 378826
Query 222060 ACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGAT 222119
||||||| | ||||| || | | || |||||| ||||| ||| || || ||||
Sbjct 378827 ACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGAT 378886
Query 222120 CCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTC 222179
| | || ||||| | || |||||||| |||||||| |||| ||| | ||||| ||||
Sbjct 378887 CAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTC 378946
Query 222180 GCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGT 222238
|||||||||| || || || || || ||| | |||||||| || || | ||
Sbjct 378947 GCTTGTTGCCGCCTTGGTCGACGTATCT-GGCAGTGTTGTTGAAGACTCGCAGCATGGGA 379005
Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTA 222298
|| | ||||| || ||||||||||| |||||| | ||| || | | |
Sbjct 379006 ACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGG 379065
Query 222299 CTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358
| | || ||||||||| ||||| ||| || ||||||||||| |||||||||||
Sbjct 379066 TGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTG 379125
Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418
|| ||||||||| || ||| ||||| | || | || || || || || | ||||
Sbjct 379126 TCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGA 379185
Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478
| | | | | ||||| || || || || |||||| || ||| | || |||
Sbjct 379186 CACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGAC 379245
Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCA 222537
|| || | ||| || || | ||| | | |||||||| ||| || | | | ||
Sbjct 379246 ATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAGATGCCG-ACAGCAAC 379304
Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTAC 222595
| |||| ||||| ||| || | || ||| || | |||| || || |||
Sbjct 379305 ACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGCT--TCAGGAGATAC 379362
Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655
||| ||||| |||||||| |||||||| | || |||||||| ||| ||| | |
Sbjct 379363 GATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTCTCTCTCGTAAACAATG 379422
Query 222656 GCGGCGTCCAGCTCCGACTTGTGCTT 222681
|| | ||| |||||| ||||||||
Sbjct 379423 GCAGAGTCGAGCTCCTCTTTGTGCTT 379448
Score = 93.3 bits (102), Expect = 8e-14
Identities = 132/185 (71%), Gaps = 8/185 (4%)
Strand=Plus/Plus
Query 221070 CGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGA----CCATGTGCTTGTTCACCACT 221125
|||| | ||| |||||| | || | || |||||| ||||| | || || ||
Sbjct 377861 CGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGG----TTGACGACC 377916
Query 221126 TGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTC 221185
||||| || |||| || || | | |||||| | ||| || ||| | || |||| || |
Sbjct 377917 TGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCAC 377976
Query 221186 TCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTG 221245
|||||||||||||| ||||| | |||| || ||||||||||| || | |||||| |
Sbjct 377977 TCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAG 378036
Query 221246 TTGCG 221250
|||||
Sbjct 378037 TTGCG 378041
>seq32
Length=314566
Score = 120 bits (132), Expect = 6e-22
Identities = 119/154 (77%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||| ||||| || ||||| ||||||||||| ||||| ||| | || ||| ||||||| |
Sbjct 225398 TGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCATCTTTT 225339
Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002
|||||||| || || |||||||||||| ||| || ||||| ||||| | | |
Sbjct 225338 GGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTG 225279
Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036
|||||||| | |||| || ||||| ||||||||
Sbjct 225278 ACGAGGGTTTGCACACCGACTTTGCATGCCTGCT 225245
Score = 113 bits (124), Expect = 8e-20
Identities = 186/265 (70%), Gaps = 5/265 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|||||| | ||||||||||||||| | || |||||| ||||||||||| || |||
Sbjct 225873 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 225814
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594
||||||| || ||| |||| | || || ||||| | | | | ||| |
Sbjct 225813 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGACGATGAAAAGTATTTCATTTCT 225754
Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | |||||||||||||| ||||| ||||| || || ||||| || ||| ||| |
Sbjct 225753 CACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCGG 225694
Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| | | || |||||| | | || || || ||||||||||| |||||||| ||
Sbjct 225693 TTCAGCGGCGAGGTGCAGGTTCCTGAAGCCCGT-TGTTTCTACGGGTTCCAGATCATGAT 225635
Query 25713 CGAAAATGTGCACTCTGAGGTGTAT 25737
|| ||| | || || ||| ||||
Sbjct 225634 GGAGAATATCCATTCCGAGACGTAT 225610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928843186132160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |