Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 322 9e-83 seq32 120 6e-22 >seq1 Length=1559860 Score = 322 bits (356), Expect = 9e-83 Identities = 854/1286 (66%), Gaps = 55/1286 (4%) Strand=Plus/Plus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474 ||||| ||| |||||||||||||||||||| ||| |||||| || ||| | ||||||| Sbjct 378198 CGTCAAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAG-CTCGCGAGCCTCGG 378256 Query 221475 GAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 |||| |||||||| || ||| | ||| ||||||||| || || || |||| || Sbjct 378257 GAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACAC 378316 Query 221535 CGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 | ||||| | || | | ||||| | ||| |||||| | ||||| || |||||| Sbjct 378317 CAATGGGACGATGCCGCATGTTGCTGTTGCGT--GCTTCTTGGACGGGGTAGTGGTTGAC 378374 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 |||||| | |||||||| || | ||| |||||| ||| | | || | Sbjct 378375 GTCGATGATCTTGTTGAGATTTCG------GAC---AACCACGCGGGTGACGTCGTGCAG 378425 Query 221653 ATT---GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 || ||| | ||| ||| ||||| | |||||||| ||| ||||||| Sbjct 378426 CTTTTGGAAGTCGTACTTGCCTTGGTCGTAG------TCCACAAAGGCGGGCAGGGCAAG 378479 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 | ||| ||||| || ||||| |||||||| | | |||| || ||||| || || Sbjct 378480 GGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCA 378539 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 ||||||| || ||||| |||| || || || || ||| | ||| | || Sbjct 378540 GAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATC 378599 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||| ||||||||||| ||||||||| ||||||| | || ||| || ||| || Sbjct 378600 CTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAG 378659 Query 221890 TTCTCTGG-CGCTCACCGTCCTCTTGAC------TGCACCCTCGGTCTTTTCATACCCGG 221942 | ||||| ||| | ||| | | | | | | |||| |||||||||| Sbjct 378660 CT-TCTGGGCGCGGATTGTCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATAC---- 378714 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 | ||| | |||||| || ||||| ||| | || || || || | ||| | Sbjct 378715 ---AAAGCCT--CAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGC 378769 Query 222003 ACATCAGACTCCAGT-GC--TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCC 222059 |||| || |||||| || || || || ||| | || |||||||||||| ||||||| Sbjct 378770 ACATGAGGGTCCAGTCGCCATTCTTCTC---GACACGCTTCATGAAGAGGTCGGGGATCC 378826 Query 222060 ACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGAT 222119 ||||||| | ||||| || | | || |||||| ||||| ||| || || |||| Sbjct 378827 ACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGAT 378886 Query 222120 CCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTC 222179 | | || ||||| | || |||||||| |||||||| |||| ||| | ||||| |||| Sbjct 378887 CAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTC 378946 Query 222180 GCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGT 222238 |||||||||| || || || || || ||| | |||||||| || || | || Sbjct 378947 GCTTGTTGCCGCCTTGGTCGACGTATCT-GGCAGTGTTGTTGAAGACTCGCAGCATGGGA 379005 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTA 222298 || | ||||| || ||||||||||| |||||| | ||| || | | | Sbjct 379006 ACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGG 379065 Query 222299 CTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 | | || ||||||||| ||||| ||| || ||||||||||| ||||||||||| Sbjct 379066 TGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTG 379125 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||||||||| || ||| ||||| | || | || || || || || | |||| Sbjct 379126 TCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGA 379185 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | | | | ||||| || || || || |||||| || ||| | || ||| Sbjct 379186 CACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGAC 379245 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCA 222537 || || | ||| || || | ||| | | |||||||| ||| || | | | || Sbjct 379246 ATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAGATGCCG-ACAGCAAC 379304 Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTAC 222595 | |||| ||||| ||| || | || ||| || | |||| || || ||| Sbjct 379305 ACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGCT--TCAGGAGATAC 379362 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655 ||| ||||| |||||||| |||||||| | || |||||||| ||| ||| | | Sbjct 379363 GATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTCTCTCTCGTAAACAATG 379422 Query 222656 GCGGCGTCCAGCTCCGACTTGTGCTT 222681 || | ||| |||||| |||||||| Sbjct 379423 GCAGAGTCGAGCTCCTCTTTGTGCTT 379448 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/185 (71%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 221070 CGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGA----CCATGTGCTTGTTCACCACT 221125 |||| | ||| |||||| | || | || |||||| ||||| | || || || Sbjct 377861 CGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGG----TTGACGACC 377916 Query 221126 TGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTC 221185 ||||| || |||| || || | | |||||| | ||| || ||| | || |||| || | Sbjct 377917 TGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCAC 377976 Query 221186 TCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTG 221245 |||||||||||||| ||||| | |||| || ||||||||||| || | |||||| | Sbjct 377977 TCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAG 378036 Query 221246 TTGCG 221250 ||||| Sbjct 378037 TTGCG 378041 >seq32 Length=314566 Score = 120 bits (132), Expect = 6e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| || ||||| ||||||||||| ||||| ||| | || ||| ||||||| | Sbjct 225398 TGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCATCTTTT 225339 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||||||| || || |||||||||||| ||| || ||||| ||||| | | | Sbjct 225338 GGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTG 225279 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 |||||||| | |||| || ||||| |||||||| Sbjct 225278 ACGAGGGTTTGCACACCGACTTTGCATGCCTGCT 225245 Score = 113 bits (124), Expect = 8e-20 Identities = 186/265 (70%), Gaps = 5/265 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | ||||||||||||||| | || |||||| ||||||||||| || ||| Sbjct 225873 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 225814 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 ||||||| || ||| |||| | || || ||||| | | | | ||| | Sbjct 225813 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGACGATGAAAAGTATTTCATTTCT 225754 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | |||||||||||||| ||||| ||||| || || ||||| || ||| ||| | Sbjct 225753 CACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCGG 225694 Query 25654 TTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || |||||| | | || || || ||||||||||| |||||||| || Sbjct 225693 TTCAGCGGCGAGGTGCAGGTTCCTGAAGCCCGT-TGTTTCTACGGGTTCCAGATCATGAT 225635 Query 25713 CGAAAATGTGCACTCTGAGGTGTAT 25737 || ||| | || || ||| |||| Sbjct 225634 GGAGAATATCCATTCCGAGACGTAT 225610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843186132160