Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1 271 1e-67 seq31 194 2e-44 seq28 178 2e-39 seq3 167 3e-36 seq6 100 4e-16 seq19 89.7 7e-13 >seq1 Length=1559860 Score = 271 bits (300), Expect = 1e-67 Identities = 555/823 (67%), Gaps = 9/823 (1%) Strand=Plus/Minus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||||| ||||| || | || || ||||| |||||||| || || || ||||| | || Sbjct 79004 GCTCTCCGTCGTCTCCGAACCGCTTGTGAGCGTGCCAAGCGTACCCTTTCTTCCTCCGCC 78945 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 ||||| ||||||||||||| | || || || || |||||||| || | || ||| Sbjct 78944 CAAACCTCCATTGAGATTGATTCTCTCTTCGAGGGCATCGACTTCTACACCTCCATCACC 78885 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 || || ||||| |||||| | | || | || | || | |||||||| Sbjct 78884 CGAGCCCGTTTCGAAGAGCTTTGCCAGGACCTCTTCCGCTCCACCATCCAGCCTGTTGAC 78825 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || ||| ||| || ||||| || ||| |||| | || || || || || || Sbjct 78824 CGCGTTCTTGCTGATGCCAAGATTGACAAGAGCCAGGTCCACGAGATCGTTCTCGTTGGC 78765 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 ||||| ||||||||||| || || || | | | || ||||||| || || Sbjct 78764 GGATCCACCCGTATTCCCCGTATCCAGAAGCTCATCACCGACTACTTCAATGGAAAGGAG 78705 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 ||||| | |||||||| || || || |||||||| ||||| || |||||||||||| Sbjct 78704 CCCAACAAGTCCATCAACCCTGACGAGGCGGTTGCTTACGGTGCCGCTGTTCAGGCTGCT 78645 Query 196421 ATTCTCTCAGGTGTTGACAATAATAACGTCCA------AGATCTTCTGCTACTTGATGTT 196474 || || || |||| | || | | ||||| |||||| |||| || || ||| Sbjct 78644 ATCCTGTCTGGTGAT-ACCAGCTCCAAGTCCACCAACGAGATCT--TGCTCCTCGACGTT 78588 Query 196475 GCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGG 196534 || || | || |||||| | || || || || ||| | ||||| || | || | | Sbjct 78587 GCCCCGCTCTCGCTGGGTATCGAGACTGCAGGCGGTATGATGACGAAGCTCATCCCTCGC 78528 Query 196535 AACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCA 196594 ||||| || ||||| || |||||| | ||||| || || | ||||| || || || Sbjct 78527 AACACCACCATTCCTACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAGCCC 78468 Query 196595 GGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTT 196654 ||||| | || || || || || || || ||| || | ||||| ||| | || | Sbjct 78467 GGTGTGCTCATCCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTGATG 78408 Query 196655 GGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTT 196714 || | || || | || || ||||| |||| || | |||||||| ||||| | ||| Sbjct 78407 GGCAAGTTTGAGCTTACCGGAATTCCTCCTGCTCCTCGGGGTGTTCCCCAGATCGAGGTT 78348 Query 196715 TGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGC 196774 || ||| | || || || || || | || || | |||| || |||| | ||| Sbjct 78347 ACATTTGATCTCGATGCCAACGGTATCATGAATGTTTCCGCTGTTGAGAAGGGCACCGGC 78288 Query 196775 AAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAA 196834 || || | |||||| | || ||||| |||||||| || || || |||||||| ||||| Sbjct 78287 AAGTCCAACAAGATTATCATCACCAACGACAAGGGACGTCTGTCCAAGGAGGAGATTGAG 78228 Query 196835 CGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || ||| || ||||| || ||||||| ||| ||||| |||| Sbjct 78227 CGCATGCTTTCTGATGCCGAGAAGTACAAGGAGGAAGATGAGG 78185 >seq31 Length=345369 Score = 194 bits (214), Expect = 2e-44 Identities = 170/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || || || || |||||||| ||||| || || |||||||||||| Sbjct 218079 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 218138 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| | ||||||||||| |||||||| ||||| ||||| ||| Sbjct 218139 GACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCAG 218198 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || |||||||| ||||| || || ||||| || || ||||| || | || || |||||| Sbjct 218199 CAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAAC 218258 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || ||||| || || Sbjct 218259 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 218290 Score = 190 bits (210), Expect = 3e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || ||||| || |||||||||||||| ||||| || Sbjct 217623 ATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCT 217682 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| | || |||||||| ||||| ||||| || ||||| ||| Sbjct 217683 GACACTATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCGACCAG 217742 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || ||||||||||||||||| |||||||| || ||||| || || |||||| Sbjct 217743 CAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACTACAAC 217802 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||| || || || || || ||||| | || || || ||| Sbjct 217803 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGGT 217850 Score = 179 bits (198), Expect = 5e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || || || || || || || ||||| |||||||| |||||||| Sbjct 218307 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 218366 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || ||||| | || | || |||||||| ||||| |||||||| || |||||| Sbjct 218367 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 218426 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || ||||||||||| |||||||| ||||| | ||||| || || |||||| Sbjct 218427 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 218486 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||||||||||| || | ||||| || || | || || ||||| Sbjct 218487 ATTCAAAAGGAGTCGACGTTGCACCTGGTGCTCCGCCTGCGTGGTGG 218533 >seq28 Length=382777 Score = 178 bits (196), Expect = 2e-39 Identities = 729/1139 (64%), Gaps = 23/1139 (2%) Strand=Plus/Plus Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 ||||| ||||| || ||||| |||| || || || ||||| ||| || |||| | Sbjct 337979 CAACGTCAGGCCACCAAGGATGCTGGTGTCATCGCCGGTCTTAACGTGCTCCGAATCGTG 338038 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 ||||| || || || ||||| ||||| || ||||||||||||| | ||| || | | | Sbjct 338039 AATGAGCCCACCGCCGCTGCCATTGCCTACGGTCTGGACAAGACCGAGGGAGA-GCGACA 338097 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || |||| ||| || ||||||||||| || || ||||| || |||||| || || Sbjct 338098 GATC-ATTG-TCTACGACCTCGGTGGTGGCACTTTCGATGTTTCCCTTCTCTCCATCGAT 338155 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 || | || ||||| ||| ||||| || ||||| ||||| ||||| || |||||| Sbjct 338156 CAGGGCGTCTTTGAAGTGCTGGCCACTGCCGGCGATACCCATCTTGGTGGCGAGGATTTC 338215 Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045 ||| || | || ||| || | | || | ||| | || || ||| Sbjct 338216 GATCAGCGCATCATCAATCACTTCGCCAAGTCGTACAACAAGAAGCACAACGTGGACATT 338275 Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105 | ||| | |||| | || ||| | | | | ||| ||||| || ||| Sbjct 338276 ACCAAGGATCTCAAGGCTATGGGTAAGCTCAAGCGCGAAGCTGAGAAGGCCAAGCGTACT 338335 Query 196106 CTCTCTTCTACGGCTCAAACAATGG--TTGAGATTGATTCGTTGTTTGACGGAATTGACT 196163 || |||||| | | | | || | | | |||||||| | || ||||| || | || | Sbjct 338336 CTGTCTTCT-CAGATGAG-CACTCGCATCGAGATTGAAGCCTTCTTTGAAGGCAAGGATT 338393 Query 196164 TCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGT 196223 ||| || | || || || ||||| ||| | ||| ||| | || | |||| Sbjct 338394 TCTCCGAGACCCTGACTCGCGCCAAGTTTGAGGAGCTCAACATGGATCTTTTCAAGAAGA 338453 Query 196224 GTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATG 196283 | || | ||||| || || ||||| || || || | | ||| | | || || | Sbjct 338454 CTCTGAAGCCTGTCGAGCAGGTACTCAAGGATGCCAATGTCAAGAAGACGGAAGTGGACG 338513 Query 196284 AAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCT---- 196339 | |||||||| || || || || || ||||| || ||| | || ||| || Sbjct 338514 ACATTGTCCTCGTCGGCGGTTCTACTCGTATCCCCAAGGTGCAG-----GCTCTCATCGA 338568 Query 196340 AGCTT-CTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTA 196398 || | ||| | || | | ||| |||||||| || || || || |||| Sbjct 338569 AGAGTACTTTGGTGGGAAGAAGGCATCCAAGGGTATCAACCCTGACGAGGCTGTCGCTTT 338628 Query 196399 TGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCT 196458 |||||| || || ||||| | | | ||||| || | || || | | | | ||| Sbjct 338629 TGGTGCCGCTGTCCAGGCCGGTGTCCTCTCTGGCGAGGAAGGTACTGAGG----AAATCG 338684 Query 196459 TCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGAC 196518 | || | || || || | | | || ||| | || || ||||||| |||||||| Sbjct 338685 TT--CTCATGGACGTCGCCGCTCTTACACTCGGTATCGAGACCACGGGTGGGGTTATGAC 338742 Query 196519 TAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTA 196578 || | ||| | | ||||| | ||||| || ||| || |||| || || Sbjct 338743 CAAGCTCATTCCTCGCAACACTCCCATTCCTACCCGCAAGAGCCAGATCTTCTCTACTGC 338802 Query 196579 TTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAA 196638 |||||||||| || | |||| || || || || || || ||||| |||| | || Sbjct 338803 CGCCGATAATCAGCCCGTGGTTCTGATCCAGGTCTACGAGGGTGAACGGTCCCTCACCAA 338862 Query 196639 GGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGT 196698 ||||||| | || || || | ||||| | || || || || |||| || |||| || Sbjct 338863 GGATAACAACCTTCTCGGCAAGTTCGAGCTTACCGGCATCCCCCCTGCCCCTCGAGGCGT 338922 Query 196699 TCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGA 196758 || |||||| | |||| ||||| | || || ||||| || || || || | || | Sbjct 338923 CCCTCAGATTGAGGTTTCTTTCGAGCTTGATGCCAATGGTATCCTGAAAGTGTCTGCCCA 338982 Query 196759 GGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTC 196818 || |||| | | ||||| || || || |||||||| ||||| || ||| | Sbjct 338983 CGATAAGGGTACAGGCAAGCAGGAGTCCATCACCATCACCAATGATAAGGGTCGTCTTAC 339042 Query 196819 TAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 | ||||||||||||| || |||||| || || || |||||| ||| || ||| ||| Sbjct 339043 TCAGGAGGAAATTGATCGCATGGTTGCCGAGGCCGAGAAGTACGCGGAGGAGGACAAGG 339101 >seq3 Length=1259731 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||||||||| ||||| || Sbjct 603192 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCTTCC 603133 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| ||||| || ||||| ||| Sbjct 603132 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 603073 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || |||||||| || ||||| || ||||| || ||||| || || |||||| Sbjct 603072 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAAC 603013 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||| || || ||| | || || | || || ||||| Sbjct 603012 ATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGCGGTGG 602966 >seq6 Length=1035304 Score = 100 bits (110), Expect = 4e-16 Identities = 212/316 (67%), Gaps = 3/316 (1%) Strand=Plus/Minus Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||||| ||| || | | || |||| || || | || || | |||| Sbjct 773973 AGATGAAGGAGATTGCCGAGACCAAGCTCGGCAAAAAGGTTGAAAAGGCCGTCATCACTG 773914 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | ||||| ||||||| || || || ||||| || ||||| || | || ||||| | Sbjct 773913 TCCCTGCCTACTTCAACGACAACCAGCGCCAGGCAACCAAGGATGCCGGCGCCATTGCCG 773854 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 | || ||| || | || ||||| || || || || ||||| ||||| || ||||| | Sbjct 773853 GCCTCAACGTCCTCCGCATCATCAACGAGCCCACTGCCGCTGCCATTGCCTACGGTCTCG 773794 Query 195843 ACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGT 195899 | |||| ||| | || || || | |||| || | ||||| ||||| | Sbjct 773793 GCTCCGGCAAGACTGACAAGGAGCGCAACGTGCTCATCTACGACTTGGGTGGCGGTACCT 773734 Query 195900 TTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959 |||| || || |||||||| || | || || | ||| || |||||||| ||||||| Sbjct 773733 TTGACGTGTCTCTTCTCAACATCCAGGGCGGCGTCTTCACCGTCAAGGCTACCGCTGGTG 773674 Query 195960 ATACTCATCTAGGTGG 195975 | || || || || || Sbjct 773673 ACACCCACCTGGGCGG 773658 >seq19 Length=546703 Score = 89.7 bits (98), Expect = 7e-13 Identities = 219/331 (66%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 195661 TAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720 |||||||||||||||||| || ||| | | || | || || |||| || || || Sbjct 332424 TAAGATGAAGGAGACTGCCGAGGCTTACCTCTCCAAGCCCGTCAAGAATGCTGTCGTCAC 332483 Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 ||| ||||| ||||||| ||| | || ||||| || || || |||| | ||||| Sbjct 332484 TGTCCCTGCCTACTTCAACGATGCTCAGCGACAAAGCACCAAAGATGCTGGTCAAATTGC 332543 Query 195781 GGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || ||| ||| | || ||||||| || || || || || | ||||||||||| Sbjct 332544 TGGCCTCAACGTTCTCCGCGTTGTCAATGAGCCTACTGCCGCAGCCCTCGCTTATGGTCT 332603 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATT---GATCTTTGATCTCGGTGGTGGTAC 195897 | |||| ||| || | | ||| | ||| ||||||||||| ||||| Sbjct 332604 ---CGAGAAGGAGGCCG------ACAGTGTCGTCGCAGTCTACGATCTCGGTGGCGGTAC 332654 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 |||||| | || | | | || | ||| | || || || || | || || Sbjct 332655 CTTTGATATTTCCATCTTGGAGATCCAGAACGGTGTTTTTGAGGTGAAATCCACCAACGG 332714 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 |||||| ||||| || |||||||| || ||| Sbjct 332715 TGATACGCATCTTGGCGGTGAAGACTTTGAT 332745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861256964080