Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 102 2e-16 seq6 89.7 2e-12 >seq3 Length=1259731 Score = 102 bits (112), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 251472 GGTGAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAA 251530 || ||||| | || || |||| | ||| | || |||||||||||||| |||| ||| | Sbjct 881187 GGAGAAGCTGCGACGCGCCGTAGGCAATGAGGCAGTCACGCTCCATTTCCCCGAGACGCA 881246 Query 251531 GACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGA 251590 | || || || |||| || |||||||| || || || |||||| | || | || || Sbjct 881247 GCCCGCCGTCTCGAGACCGACCCTCGGTCGGTTGCCGCGTGAGAATGGCCCTGGGTCCAC 881306 Query 251591 TGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGAC 251650 ||||||| ||| ||| || | ||||| ||||| || ||||||||| | ||||| Sbjct 881307 GGGAGCGGGAATGCATCTTGTCCTGGACCATGTGCTTCAGGCGCTGGTAGTAGATGGGAC 881366 Query 251651 CGATGAAGATG 251661 || | |||||| Sbjct 881367 CGTTAAAGATG 881377 >seq6 Length=1035304 Score = 89.7 bits (98), Expect = 2e-12 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || || || || || || | ||||| |||| || |||||||| | ||| Sbjct 761617 GTCTTGACGGCCGTGTCGATGAGGCCCTCGCGACCGGCCATGGCGTGGAAGAAGAACTCG 761558 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 ||| ||| || || | | | ||| |||| ||||| || || ||||||||||| | Sbjct 761557 GTCGG-CGTCAGGCCGCGCAGGTACGAGTTCTCGACGAAGCCGCGGGCCTCGGGCGAGTA 761499 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||||| ||||| ||||| |||| || | |||| | ||||| ||||| || Sbjct 761498 GTCGTCCTTGGTGAAGTGCGGCAGCGTCCGGTATTTGAAGCCAAAGGGGATGCGCTTGCC 761439 Query 302799 ATCAACGTTCTGCTGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843 || || ||||||| | ||||| || ||||||| || || || Sbjct 761438 CTCGACAATCTGCTGGCCGACCAGGGCCG---TCATCTGGGAGATGTT 761394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814978784843