Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3 102 2e-16
seq6 89.7 2e-12
>seq3
Length=1259731
Score = 102 bits (112), Expect = 2e-16
Identities = 138/191 (72%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 251472 GGTGAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAA 251530
|| ||||| | || || |||| | ||| | || |||||||||||||| |||| ||| |
Sbjct 881187 GGAGAAGCTGCGACGCGCCGTAGGCAATGAGGCAGTCACGCTCCATTTCCCCGAGACGCA 881246
Query 251531 GACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGA 251590
| || || || |||| || |||||||| || || || |||||| | || | || ||
Sbjct 881247 GCCCGCCGTCTCGAGACCGACCCTCGGTCGGTTGCCGCGTGAGAATGGCCCTGGGTCCAC 881306
Query 251591 TGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGAC 251650
||||||| ||| ||| || | ||||| ||||| || ||||||||| | |||||
Sbjct 881307 GGGAGCGGGAATGCATCTTGTCCTGGACCATGTGCTTCAGGCGCTGGTAGTAGATGGGAC 881366
Query 251651 CGATGAAGATG 251661
|| | ||||||
Sbjct 881367 CGTTAAAGATG 881377
>seq6
Length=1035304
Score = 89.7 bits (98), Expect = 2e-12
Identities = 159/228 (70%), Gaps = 8/228 (4%)
Strand=Plus/Minus
Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679
|| || || || || || || || || | ||||| |||| || |||||||| | |||
Sbjct 761617 GTCTTGACGGCCGTGTCGATGAGGCCCTCGCGACCGGCCATGGCGTGGAAGAAGAACTCG 761558
Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738
||| ||| || || | | | ||| |||| ||||| || || ||||||||||| |
Sbjct 761557 GTCGG-CGTCAGGCCGCGCAGGTACGAGTTCTCGACGAAGCCGCGGGCCTCGGGCGAGTA 761499
Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798
|||| |||||| ||||| ||||| |||| || | |||| | ||||| ||||| ||
Sbjct 761498 GTCGTCCTTGGTGAAGTGCGGCAGCGTCCGGTATTTGAAGCCAAAGGGGATGCGCTTGCC 761439
Query 302799 ATCAACGTTCTGCTGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843
|| || ||||||| | ||||| || ||||||| || || ||
Sbjct 761438 CTCGACAATCTGCTGGCCGACCAGGGCCG---TCATCTGGGAGATGTT 761394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471814978784843
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |