Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 170 2e-36 seq6 156 5e-32 seq27 149 8e-30 seq2 131 2e-24 seq32 109 7e-18 seq36 100 3e-15 >seq1 Length=1559860 Score = 170 bits (188), Expect = 2e-36 Identities = 225/312 (72%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||| | || |||| ||| ||||| || |||||||| |||| |||||| || Sbjct 378961 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAG 379020 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||||||||| || | ||||| |||| || || | ||| || | |||| Sbjct 379021 GTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCG 379080 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || ||||||||| || || || | ||||| ||||| |||||||||||||||||| Sbjct 379081 ATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCG 379140 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||||||||| ||||| |||||||| || || || | |||||| Sbjct 379141 ATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCC 379200 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 ||||||||||| || || | || |||||| || | | |||||| || |||||| Sbjct 379201 GCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTT 379260 Query 1630366 GCGAGCACGCGC 1630377 | || |||||| Sbjct 379261 TCCAGGACGCGC 379272 Score = 127 bits (140), Expect = 2e-23 Identities = 338/518 (65%), Gaps = 14/518 (3%) Strand=Plus/Plus Query 1628090 GGTCGGCGACGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCG 1628149 ||||| | | ||||| ||||||||| | | || ||||||||| || || || Sbjct 378449 GGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGT 378508 Query 1628150 TGGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGG 1628208 ||| | ||| ||| || ||||||||||| ||||||| | || | || |||| | Sbjct 378509 CGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAA-TGGTTCCCAAG 378567 Query 1628209 TTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTC 1628268 |||| ||||||| | || |||| ||||||| ||||| |||| ||| ||| Sbjct 378568 TTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTC 378627 Query 1628269 TCGATCTGCGCCGCGACGATGGCCGACCAGA---TCTGGCGCGCGGGCACGACAGTCC-G 1628324 ||| |||| ||| ||| ||| | |||| | ||||| |||||| | ||| | Sbjct 378628 TCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGG-GCGCGG-----ATTGTCTTG 378681 Query 1628325 CG--CGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCAC 1628382 || | ||||| | ||||| | |||||||||| Sbjct 378682 CGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAG 378741 Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442 ||| || || || ||| || || | ||| | |||||||||| || | | Sbjct 378742 TCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACA 378801 Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502 || ||| |||||||| ||||||| || ||||||||||| || ||| ||| Sbjct 378802 CGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCC 378861 Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562 |||||||||||||||||| |||| || || | || | | ||||||||||| |||||| Sbjct 378862 TCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCC 378921 Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||||| ||| ||||||||| |||||| |||||| Sbjct 378922 AGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCC 378959 Score = 111 bits (122), Expect = 2e-18 Identities = 331/504 (66%), Gaps = 14/504 (3%) Strand=Plus/Plus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTG-GTGCGCAGATAGTACATGC 1627039 |||||| ||||| |||||||||| | | ||||||| | || ||||||| |||||||||| Sbjct 377559 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGCGG-CTTGCGTGCGCAAGTAGTACATGC 377617 Query 1627040 CGGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGC-GCTCGGGCGTC 1627098 | |||||||| || | |||| || ||||||||||||||| || | | || Sbjct 377618 CAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATG-GTT 377676 Query 1627099 GCGTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCC 1627158 | ||| || | |||||| |||||| |||||||| | ||| |||| ||||| Sbjct 377677 GGGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCG 377736 Query 1627159 GCCATGTCGATGG--TGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGA 1627216 ||||| | | |||| | | | | ||||| || |||||| | | ||||| | Sbjct 377737 GCCATCTGCACCACATGACGCTGC--GAAATTTCCCAGACCGTCTTGTACAGAGCCTTTA 377794 Query 1627217 GGTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCC 1627276 ||| || | | | | | | ||| | |||||||| | | || | || | Sbjct 377795 CCTCGCCGGGAATGTTGGGG------ATGTTCTGGATCGAGCCGTTCTCGGCAATGATGC 377848 Query 1627277 TGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGT 1627336 | | | || | |||||| || | | || ||||| || ||| Sbjct 377849 GATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGT 377908 Query 1627337 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCT 1627396 |||| || || ||||||| || ||||| ||| ||| |||||| ||| | || Sbjct 377909 TGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCT 377968 Query 1627397 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 1627456 || | |||| |||||||||| ||||||||||| | |||||||||||| |||| | | Sbjct 377969 CGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCA 378028 Query 1627457 GGAGCGAGTTGCGCAGGCCGTGCT 1627480 | ||||||||||| | ||||||| Sbjct 378029 GCAGCGAGTTGCGAATCCCGTGCT 378052 >seq6 Length=1035304 Score = 156 bits (172), Expect = 5e-32 Identities = 192/263 (73%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 509034 CGCCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGA 509093 |||||||| ||||||||| || ||||||||| ||||||||| | || |||| Sbjct 761503 CGCCCGAGGCCCGCGGCTTCGTCGAGAACTCGTACCTGCGCGGCCTGACGCCGACCGAGT 761562 Query 509094 TGTTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCG 509153 | || | ||| || | ||| |||||||||||| |||||||||||||||||||||||| Sbjct 761563 TCTTCTTCCACGCCATGGCCGGTCGCGAGGGCCTCATCGACACGGCCGTCAAGACGGCCG 761622 Query 509154 AGACGGGCTACATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAAGCG-- 509211 ||||||||||||||||||| ||| ||||| || | ||| ||| || | ||| Sbjct 761623 AGACGGGCTACATCCAGCGGCGGCTGGTCAAGGCGCTCGAGGACCT---GAGCGCGCGGT 761679 Query 509212 -CGGCGGCCTCGTGCGCAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGACG 509270 || ||| ||||||||| | ||||||||| |||||||| ||| |||| |||| Sbjct 761680 ACGACGGGACGGTGCGCAACTCGCTCGGCGACATTGTCCAGTTCCTCTACGGCGAGGACG 761739 Query 509271 GNNNNNNCGCCACCTACATCGAG 509293 | ||||| | ||||||| Sbjct 761740 GCCTGGACGCCATGTGCATCGAG 761762 Score = 125 bits (138), Expect = 9e-23 Identities = 252/374 (67%), Gaps = 6/374 (2%) Strand=Plus/Plus Query 511949 GGCGTGGACGCCTCGCGCAGTCACACCAACGACATCAACCGCGTGGCCGCCGTGCTGGGC 512008 ||||||||| || | |||| ||||||||||| || | | | || || | ||| Sbjct 763110 GGCGTGGACCCCACCCGCACCTACACCAACGACCTCTGGCAGATTGTCGAGGTCTTTGGC 763169 Query 512009 ATCGAGGCCGCCGTGGCCGTGCTCTTTTCCGAGATCAAGGCCGTCATCTCCTTTGACGGC 512068 ||||||||||| | ||| ||| | ||| | | ||| | ||||||||||| Sbjct 763170 ATCGAGGCCGCGCGGTCCGCGCTGGTCAAGGAGCTGACCAACGTGCTGGCCTTTGACGGC 763229 Query 512069 ACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGCCGCGGATCG 512128 ||||||||||| |||||||| | || ||| | |||| |||| | ||| || Sbjct 763230 TCCTACGTCAACCACCGCCACATCGCCCTGCTCGTCGACGTCATGACGTACCGGGGCAGC 763289 Query 512129 GTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTCCTGTCGCGGGCC 512188 | ||||||||| || |||||| |||||||||||||| || |||| ||| | Sbjct 763290 ATCTCGGCCGTCACCCGGCACGGCATCAACCGCGCCGACACGGGGGCCCTGATGCGCTGC 763349 Query 512189 TCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAGACCGACAAG 512248 || ||||| ||||| ||||| |||||| | || || |||||| | ||| ||| | Sbjct 763350 TCCTTCGAGGAGACGGTCGAGATCCTCCTCGAGGCCGCGGCCACCGGGGAGCTTGACGAC 763409 Query 512249 ATCACCGACGGCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCCATCGGCACG 512308 | || | ||||| | || |||| ||||||||| ||||||||| ||||| Sbjct 763410 TGCCGCGGCATCTCGGAAAACG------TCATGCTGGGCCAGCTGGCGCCCATGGGCACC 763463 Query 512309 GCCATCTCGGACGT 512322 | || || ||||| Sbjct 763464 GGCAACTTTGACGT 763477 >seq27 Length=383444 Score = 149 bits (164), Expect = 8e-30 Identities = 125/151 (83%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 ||||||||||||| ||||||||||||||||| ||||||||| || | || ||||||| Sbjct 85462 AGGACAGCATCGGAGGCACGGTGACGTGCGTCGTTCGCAACGTCCCCACCGGACTCGGCG 85521 Query 19105 AG-CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 || ||||| |||| |||| | ||||| |||||||||| | |||||| ||||||||| Sbjct 85522 AGCCCGTGTTTTG-CAAGCTGGAGGCGACGCTCGCCCAGGGCATGCTCAGCATCCCGGCC 85580 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194 |||||||||||||| || ||| |||||||| Sbjct 85581 ACCAAGGGATTCGAAATCGGCTCCGGGTTTG 85611 >seq2 Length=1393780 Score = 131 bits (144), Expect = 2e-24 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||||||||| ||||||||| ||||||| | || ||||| |||| |||||||||| Sbjct 81799 CCAACTACCTCGATATCAAGCCTTTGCTCGACGTGGGCTGCAAAACTGTCGCCAACATGA 81858 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 81859 TCAAGGGCAAGTCCCCCGAGGAAATCCGCAAGACTTTCAACATCA 81903 >seq32 Length=314566 Score = 109 bits (120), Expect = 7e-18 Identities = 150/203 (74%), Gaps = 15/203 (7%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| |||| ||||| || || | |||||| |||| || ||||||||||||||| Sbjct 225266 TGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGGCATGAGGCCG 225325 Query 869234 CGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGA--GAAAAAGATGCCCTCGACG 869290 |||||||||||||||||||||| ||| ||| ||| | | ||| |||||||||||||| Sbjct 225326 CGCTTCTTGAGCCAAAAGATGGACGC-GAA--TGCACCACTGAAGAAGATGCCCTCGACA 225382 Query 869291 GCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCAC 869347 ||||| ||| | | | || | ||| ||| | || ||||||| | |||||| Sbjct 225383 GCGGCGAAGGCAACCAATCGTTGGGCGAAG----CTAG--ACTCCTTGTCTTGGATCCAG 225436 Query 869348 TTCATCGCCCAGTCGGCCTTTTT 869370 || ||||||||||||||||| Sbjct 225437 CGGATGGCCCAGTCGGCCTTTTT 225459 Score = 107 bits (118), Expect = 2e-17 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| ||| ||||||||||||||||| | || ||||| Sbjct 224957 GCCTTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATA 225016 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||||| || | |||||||| |||||| ||||| | | Sbjct 225017 TTCTCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGAGAGCAACC 225076 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | |||||||||||| || || |||||||| || ||| || || ||||||||||| Sbjct 225077 AACAGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGA 225136 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || |||||| | ||| ||| || |||| ||| || |||||| ||| |||| Sbjct 225137 AGAGCGCACGGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGATG 225196 Query 868931 AT 868932 || Sbjct 225197 AT 225198 >seq36 Length=277325 Score = 100 bits (110), Expect = 3e-15 Identities = 169/240 (70%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 733083 CCCG-AGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGT 733141 |||| || | |||||||| | |||| || ||||| ||||||||||| | || || Sbjct 33586 CCCGCAGATTGGCGACAAGTTTGCGTCTCGTCACGGACAAAAGGGCACGATTGGT---GT 33530 Query 733142 G-CGCTCCACC--GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGT 733198 | || || | ||||||||||||| | | | | || | |||||| |||||| | Sbjct 33529 GACGTACCGGCAGGAGGACATGCCCTTTACACGG---GAAGGGGTCACGCCAGACATCAT 33473 Query 733199 GATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCT 733258 ||||||||||||||||| |||||||| ||||| || | | | || ||||| ||| || Sbjct 33472 CATCAACCCGCACGCCATTCCGTCGCGAATGACAATTGCCCACTTGATCGAGTGCCTGCT 33413 Query 733259 GGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTTTGGCGGCGTCAC 733318 |||||||| || | |||||| ||||| | |||||||||| || ||| || Sbjct 33412 AAGCAAGGTGTCCACGCTGGAGGGCATGGAGGGCGATGCCACGCCCTTTACCGACGTGAC 33353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107127793009063