Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1 250 2e-61
seq31 118 1e-21
seq25 111 1e-19
>seq1
Length=1559860
Score = 250 bits (276), Expect = 2e-61
Identities = 1036/1609 (64%), Gaps = 58/1609 (4%)
Strand=Plus/Plus
Query 138424 CCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAG 138483
||||| | |||||||||||||| ||||| | || ||||| || | || |
Sbjct 377830 CCGTTCTCGGCAATGATGCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGA 377889
Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543
|| || | || || ||| | |||||| || || || |||| || || || ||||
Sbjct 377890 TCCTTGAGAAGCCATGGGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAA 377949
Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603
|||||| ||| | ||||| || | |||||||| ||||||||||| | ||||| |||
Sbjct 377950 ATGTTGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCC 378009
Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG 138663
|| |||||| ||| | || || || || || | ||||| |||||| | ||||||
Sbjct 378010 GTGGGCATGGGCGCGAGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTG 378069
Query 138664 AGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATT 138723
|| || ||| |||||||| ||| || | ||||||||| || |||| | ||
Sbjct 378070 AGGGAATCCCACTCCCACAAGTCGGACGGCGTCACGTTCCACATGTCAAACTGCAGGATG 378129
Query 138724 CCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCG 138783
|| | || ||| || | | ||| ||| ||| ||| | |||| |||
Sbjct 378130 CCTTCAGAGGCCGGAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCC 378189
Query 138784 TTGCTCGCC-TCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCG 138842
|||| || || || | | ||| || || || |||||||| || ||| ||
Sbjct 378190 ACCGACGCCGTCAAG-GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCG 378248
Query 138843 GGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCAC 138902
||||||| ||| | |||||||| ||| ||| |||||||||| ||||| ||
Sbjct 378249 AGCCTCGGGAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAAC 378308
Query 138903 GCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGAT 138958
|| || || | || ||||| |||| || ||| ||||| ||||| || || |
Sbjct 378309 ACCGACACCAATGGGACGATGCCGCA----TGTTGCTGTTGCGTGCTTCTTGGACGGGGT 378364
Query 138959 AATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCAC----CTTA-GTCGT-AT 139012
| | ||| || |||||||| ||||| | |||||| || ||||| | | |||||
Sbjct 378365 AGTGGTTGACGTCGATGATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCA 378424
Query 139013 GCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGT 139072
|||| || || ||||| |||| ||| | || ||| ||||| |
Sbjct 378425 GCTT------TTGGAAGTCGTACTTGCC----TTG-----GTCGTAGTCCACAAAGGCGG 378469
Query 139073 TGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAA 139132
| || ||||| | |||||| || || || ||||||||| | ||| |||| ||
Sbjct 378470 GCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAA 378529
Query 139133 TTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGT 139192
| |||| || | || | || || || || || | || ||||| || | ||
Sbjct 378530 TCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGT 378589
Query 139193 TACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGA 139252
| ||| ||| ||||| |||||| | || ||||||| || || | ||| | ||
Sbjct 378590 TGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCG 378649
Query 139253 ATTTGAACAAGTCCCTAGCTTGTATT-TGACGCACGTAAAGTTCGTCGCGCTCGTACTTT 139311
| | ||| | | || | ||| | || | | | | |||||||||||||||
Sbjct 378650 AGTACCACAGCTTCTGGGCGCGGATTGTCTTGC-GGCCACGGCCTTCGCGCTCGTACTTT 378708
Query 139312 TCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGG 139370
|| || | | || || ||| || |||||| ||| | || | | || | || ||
Sbjct 378709 TCATACAAAGCCTCAAACTCG-TCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGG 378767
Query 139371 ACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCA 139430
|||||||| | ||| |||| ||| || ||| ||| ||||||| || || || |||||
Sbjct 378768 GCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCA 378827
Query 139431 CAAAGCGAACAGCAAATCGC--GCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATG 139488
|| || | | | |||| |||| || || ||| || ||| | | |
Sbjct 378828 CAGCGCAAGGAAGAGGTCGCGAGCGCGGACT--TCCTCCTTGCCGTGGTTCTTTCTGAGA 378885
Query 139489 TTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---T 139545
| |||||| ||||| || || |||||||| || ||||| |||||||| | ||||| |
Sbjct 378886 TCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGT 378945
Query 139546 TTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGC 139605
| ||||| ||||| ||||||| || ||| || ||||| || |||| ||| ||
Sbjct 378946 CGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGA 379005
Query 139606 TCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATG--GGA-CTGTTGCGAGCTCGGA 139660
| | ||| ||| || |||||||||| ||| ||| ||| | | | ||| || |
Sbjct 379006 ACGACGCCGTTCGAGGTGCCGTTGGTGC--CGGCAATGTAGGATCCGGT---AGCACGAA 379060
Query 139661 CGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGT 139719
| || || || | |||||| |||||| | | ||| || || | ||||| || |
Sbjct 379061 TGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTG- 379119
Query 139720 AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAA 139779
| || ||||| || || |||||||| |||| ||| ||| || ||||| || |||
Sbjct 379120 AGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAA 379179
Query 139780 AGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGT 139839
|| || | |||||| || || || ||||| ||||| ||||| | ||
Sbjct 379180 AGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTA 379239
Query 139840 TTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACA 139899
| ||||| | | ||| ||||| | | ||| | |||| | ||| ||| ||||||
Sbjct 379240 CTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAGATGCCGACA 379299
Query 139900 GAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGA 139959
| || ||||| | ||| || || |||||| | | | ||| || | || |||
Sbjct 379300 GCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGCTTCAGGAGA 379359
Query 139960 TA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006
|| | || ||| || |||||| | ||||||||| ||||||||| ||
Sbjct 379360 TACGATCG--CTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTC 379406
>seq31
Length=345369
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || || || || ||||| || ||||| ||||| || | |
Sbjct 218079 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 218138
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| |||||||| ||||| || || ||||| ||
Sbjct 218139 GACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCAG 218198
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882
|| || | ||||||||||| || ||||| ||||| || |||| || | || || ||
Sbjct 218199 CAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGA-CGGACGAACATTGGCCGACTACAA 218257
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||| || ||||| || || || ||| ||||| |||| | ||||| |||
Sbjct 218258 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTCCGCGGCGGC 218306
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || ||||| ||||| || || || |||||||| || || | |
Sbjct 218307 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 218366
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || || || |||||||| || || || ||||| |||||
Sbjct 218367 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 218426
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | |||||||| || || ||||| |||||| ||||| | | | || || |||
Sbjct 218427 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 218486
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||||||||| ||||| | ||| ||||| | || |||| || |||
Sbjct 218487 ATTCAAAAGGAGTCGACGTTGCACCTGGTGCTCCGCCTGCGTGGTGGC 218534
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || || || || || | ||
Sbjct 217851 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 217910
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || || ||||||||||| || || || || ||||| ||
Sbjct 217911 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 217970
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||||| ||||||||||| || ||||| || || || | | | || | || || |||
Sbjct 217971 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 218030
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || |||||||| || || || | || |||| ||||||| |||
Sbjct 218031 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGGC 218078
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||| ||||| | || || || ||||| || || || || ||||| || || |
Sbjct 217620 ACCATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCT 217679
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || || || || |||||||| || || || || |||||
Sbjct 217680 TCTGACACTATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCGAC 217739
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || || ||||||||||| || |||||||| || ||| | | | || | || ||
Sbjct 217740 CAGCAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACTAC 217799
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| || |||||||| || || || |||| | || |||| || ||
Sbjct 217800 AACATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGG 217849
>seq25
Length=408197
Score = 111 bits (122), Expect = 1e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 24713 TTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTA 24772
||| | || || || || || || || || |||||||| || || || ||||||| |
Sbjct 312591 TTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGATC 312532
Query 24773 GAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTG 24832
|| | || || |||||||| ||||| || || || |||||||| || || ||||||
Sbjct 312531 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTTG 312472
Query 24833 ATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAG 24892
|||||||| || || |||||||||||| ||| | || | || || |||||||| |||
Sbjct 312471 ATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTGGCCGACTACAACATTCAGAAG 312412
Query 24893 G 24893
|
Sbjct 312411 G 312411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449896818302920
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