Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 250 2e-61 seq31 118 1e-21 seq25 111 1e-19 >seq1 Length=1559860 Score = 250 bits (276), Expect = 2e-61 Identities = 1036/1609 (64%), Gaps = 58/1609 (4%) Strand=Plus/Plus Query 138424 CCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAG 138483 ||||| | |||||||||||||| ||||| | || ||||| || | || | Sbjct 377830 CCGTTCTCGGCAATGATGCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGA 377889 Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || | || || ||| | |||||| || || || |||| || || || |||| Sbjct 377890 TCCTTGAGAAGCCATGGGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAA 377949 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| ||| | ||||| || | |||||||| ||||||||||| | ||||| ||| Sbjct 377950 ATGTTGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCC 378009 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG 138663 || |||||| ||| | || || || || || | ||||| |||||| | |||||| Sbjct 378010 GTGGGCATGGGCGCGAGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTG 378069 Query 138664 AGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATT 138723 || || ||| |||||||| ||| || | ||||||||| || |||| | || Sbjct 378070 AGGGAATCCCACTCCCACAAGTCGGACGGCGTCACGTTCCACATGTCAAACTGCAGGATG 378129 Query 138724 CCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCG 138783 || | || ||| || | | ||| ||| ||| ||| | |||| ||| Sbjct 378130 CCTTCAGAGGCCGGAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCC 378189 Query 138784 TTGCTCGCC-TCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCG 138842 |||| || || || | | ||| || || || |||||||| || ||| || Sbjct 378190 ACCGACGCCGTCAAG-GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCG 378248 Query 138843 GGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCAC 138902 ||||||| ||| | |||||||| ||| ||| |||||||||| ||||| || Sbjct 378249 AGCCTCGGGAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAAC 378308 Query 138903 GCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGAT 138958 || || || | || ||||| |||| || ||| ||||| ||||| || || | Sbjct 378309 ACCGACACCAATGGGACGATGCCGCA----TGTTGCTGTTGCGTGCTTCTTGGACGGGGT 378364 Query 138959 AATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCAC----CTTA-GTCGT-AT 139012 | | ||| || |||||||| ||||| | |||||| || ||||| | | ||||| Sbjct 378365 AGTGGTTGACGTCGATGATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCA 378424 Query 139013 GCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGT 139072 |||| || || ||||| |||| ||| | || ||| ||||| | Sbjct 378425 GCTT------TTGGAAGTCGTACTTGCC----TTG-----GTCGTAGTCCACAAAGGCGG 378469 Query 139073 TGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAA 139132 | || ||||| | |||||| || || || ||||||||| | ||| |||| || Sbjct 378470 GCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAA 378529 Query 139133 TTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGT 139192 | |||| || | || | || || || || || | || ||||| || | || Sbjct 378530 TCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGT 378589 Query 139193 TACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGA 139252 | ||| ||| ||||| |||||| | || ||||||| || || | ||| | || Sbjct 378590 TGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCG 378649 Query 139253 ATTTGAACAAGTCCCTAGCTTGTATT-TGACGCACGTAAAGTTCGTCGCGCTCGTACTTT 139311 | | ||| | | || | ||| | || | | | | ||||||||||||||| Sbjct 378650 AGTACCACAGCTTCTGGGCGCGGATTGTCTTGC-GGCCACGGCCTTCGCGCTCGTACTTT 378708 Query 139312 TCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGG 139370 || || | | || || ||| || |||||| ||| | || | | || | || || Sbjct 378709 TCATACAAAGCCTCAAACTCG-TCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGG 378767 Query 139371 ACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCA 139430 |||||||| | ||| |||| ||| || ||| ||| ||||||| || || || ||||| Sbjct 378768 GCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCA 378827 Query 139431 CAAAGCGAACAGCAAATCGC--GCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATG 139488 || || | | | |||| |||| || || ||| || ||| | | | Sbjct 378828 CAGCGCAAGGAAGAGGTCGCGAGCGCGGACT--TCCTCCTTGCCGTGGTTCTTTCTGAGA 378885 Query 139489 TTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---T 139545 | |||||| ||||| || || |||||||| || ||||| |||||||| | ||||| | Sbjct 378886 TCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGT 378945 Query 139546 TTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGC 139605 | ||||| ||||| ||||||| || ||| || ||||| || |||| ||| || Sbjct 378946 CGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGA 379005 Query 139606 TCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATG--GGA-CTGTTGCGAGCTCGGA 139660 | | ||| ||| || |||||||||| ||| ||| ||| | | | ||| || | Sbjct 379006 ACGACGCCGTTCGAGGTGCCGTTGGTGC--CGGCAATGTAGGATCCGGT---AGCACGAA 379060 Query 139661 CGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGT 139719 | || || || | |||||| |||||| | | ||| || || | ||||| || | Sbjct 379061 TGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTG- 379119 Query 139720 AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAA 139779 | || ||||| || || |||||||| |||| ||| ||| || ||||| || ||| Sbjct 379120 AGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAA 379179 Query 139780 AGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGT 139839 || || | |||||| || || || ||||| ||||| ||||| | || Sbjct 379180 AGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTA 379239 Query 139840 TTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACA 139899 | ||||| | | ||| ||||| | | ||| | |||| | ||| ||| |||||| Sbjct 379240 CTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAGATGCCGACA 379299 Query 139900 GAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGA 139959 | || ||||| | ||| || || |||||| | | | ||| || | || ||| Sbjct 379300 GCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGCTTCAGGAGA 379359 Query 139960 TA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || | || ||| || |||||| | ||||||||| ||||||||| || Sbjct 379360 TACGATCG--CTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTC 379406 >seq31 Length=345369 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || ||||| || ||||| ||||| || | | Sbjct 218079 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 218138 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || || ||||| || Sbjct 218139 GACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCAG 218198 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || || | ||||||||||| || ||||| ||||| || |||| || | || || || Sbjct 218199 CAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGA-CGGACGAACATTGGCCGACTACAA 218257 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || ||| ||||| |||| | ||||| ||| Sbjct 218258 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTCCGCGGCGGC 218306 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| ||||| || || || |||||||| || || | | Sbjct 218307 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 218366 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || || || |||||||| || || || ||||| ||||| Sbjct 218367 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 218426 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| ||||| | | | || || ||| Sbjct 218427 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 218486 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| ||||| | ||| ||||| | || |||| || ||| Sbjct 218487 ATTCAAAAGGAGTCGACGTTGCACCTGGTGCTCCGCCTGCGTGGTGGC 218534 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | || Sbjct 217851 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 217910 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||||||||| || || || || ||||| || Sbjct 217911 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 217970 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || ||||| || || || | | | || | || || ||| Sbjct 217971 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 218030 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | || |||| ||||||| ||| Sbjct 218031 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGGC 218078 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| ||||| | || || || ||||| || || || || ||||| || || | Sbjct 217620 ACCATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCT 217679 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || || || |||||||| || || || || ||||| Sbjct 217680 TCTGACACTATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCGAC 217739 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||||||| || |||||||| || ||| | | | || | || || Sbjct 217740 CAGCAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACTAC 217799 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || |||||||| || || || |||| | || |||| || || Sbjct 217800 AACATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGG 217849 >seq25 Length=408197 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 24713 TTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTA 24772 ||| | || || || || || || || || |||||||| || || || ||||||| | Sbjct 312591 TTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGATC 312532 Query 24773 GAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTG 24832 || | || || |||||||| ||||| || || || |||||||| || || |||||| Sbjct 312531 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTTG 312472 Query 24833 ATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAG 24892 |||||||| || || |||||||||||| ||| | || | || || |||||||| ||| Sbjct 312471 ATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTGGCCGACTACAACATTCAGAAG 312412 Query 24893 G 24893 | Sbjct 312411 G 312411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896818302920