Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 145 1e-28 seq1 123 4e-22 seq2 118 2e-20 seq32 113 7e-19 seq84 95.1 2e-13 seq36 91.5 2e-12 >seq6 Length=1035304 Score = 145 bits (160), Expect = 1e-28 Identities = 177/240 (74%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 431020 CGCCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGA 431079 |||||||| ||||||||| || ||||||||| ||||||||| | || |||| Sbjct 761503 CGCCCGAGGCCCGCGGCTTCGTCGAGAACTCGTACCTGCGCGGCCTGACGCCGACCGAGT 761562 Query 431080 TGTTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCG 431139 | || | ||| || | ||| |||||||| ||| |||||||||||||||||||||||| Sbjct 761563 TCTTCTTCCACGCCATGGCCGGTCGCGAGGGCCTCATCGACACGGCCGTCAAGACGGCCG 761622 Query 431140 AGACGGGCTACATCCAGCGTCGGTGCATCAAATCGATGGAGAGCCTGCAGATCAAGCG-- 431197 ||||||||||||||||||| ||| |||| || | ||| ||| || | ||| Sbjct 761623 AGACGGGCTACATCCAGCGGCGGCTGGTCAAGGCGCTCGAGGACCT---GAGCGCGCGGT 761679 Query 431198 -CGGCGGCCTCGTGCGCAACGCCAACGGCGACATTGTCCAGTTTGCCTATGGCGGCGACG 431256 || ||| ||||||||| | |||||||||||||||||| ||| |||| |||| Sbjct 761680 ACGACGGGACGGTGCGCAACTCGCTCGGCGACATTGTCCAGTTCCTCTACGGCGAGGACG 761739 Score = 109 bits (120), Expect = 9e-18 Identities = 198/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 434025 GGCGTGGACGCCGCACGCAGCCACACCAACGACATCAACCGCGTGGCGGCCGTACTGGGC 434084 ||||||||| || | |||| | ||||||||||| || | | | | || | ||| Sbjct 763110 GGCGTGGACCCCACCCGCACCTACACCAACGACCTCTGGCAGATTGTCGAGGTCTTTGGC 763169 Query 434085 ATCGAAGCGGCCGTCGCTGT--GCTCTTTTCC--GAGATCAAGGCCGTGATCTCCTTTGA 434140 ||||| ||||| ||| || || || || ||| | | |||| | ||||||| Sbjct 763170 ATCGA---GGCCG-CGCGGTCCGCGCTGGTCAAGGAGCTGACCAACGTGCTGGCCTTTGA 763225 Query 434141 CGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGTCGCGG 434200 |||| ||||||||||| |||||||| | || ||| | |||| |||| | || || Sbjct 763226 CGGCTCCTACGTCAACCACCGCCACATCGCCCTGCTCGTCGACGTCATGACGTACCGGGG 763285 Query 434201 CTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCGGGCCGACCACGGCTTTCTGTCGCG 434260 | | ||||||||| ||||||||| ||||||| |||||| || ||| ||| Sbjct 763286 CAGCATCTCGGCCGTCACCCGGCACGGCATCAACCGCGCCGACACGGGGGCCCTGATGCG 763345 Query 434261 GGCCTCCTTTGAGGAGACTGTCGACATCCTCTTTGACGCGGCGGCC 434306 |||||| |||||||| ||||| |||||| | || || |||||| Sbjct 763346 CTGCTCCTTCGAGGAGACGGTCGAGATCCTCCTCGAGGCCGCGGCC 763391 >seq1 Length=1559860 Score = 123 bits (136), Expect = 4e-22 Identities = 328/501 (65%), Gaps = 15/501 (3%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| || | || |||| ||| ||||| || |||||||| || | |||||| || Sbjct 378961 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAG 379020 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||||||||| || | ||||| || | || || | ||| || | |||| Sbjct 379021 GTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCG 379080 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || ||||||||| || || || | ||||| | || || || ||||||||||||||| Sbjct 379081 ATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCG 379140 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||| |||||||||| | || |||||||| || || | | |||||| Sbjct 379141 ATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCC 379200 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGTG 2073840 || |||||||| || || | || ||| | | | ||||||| | |||||| Sbjct 379201 GCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTT 379260 Query 2073841 GCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGACG 2073900 | || |||||| | | | || ||| || || ||||| || || Sbjct 379261 TCCAGGACGCGCTCAA-----TGTT----GTC------TCCCCAGATGCCGACAGCAACA 379305 Query 2073901 CGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGAC 2073960 ||||||||||||| ||| ||||| ||||| | | || || ||| || || || Sbjct 379306 CGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGCTTCAGGAGATACGAT 379365 Query 2073961 CGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGCG 2074020 || ||| ||| | ||||||||| ||| | ||| | ||||| ||||| Sbjct 379366 CGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTCTCTCTCGTAAACAATGGCA 379425 Query 2074021 GCGTCGAGGGCCTCCTTGTGC 2074041 | |||||| |||| |||||| Sbjct 379426 GAGTCGAGCTCCTCTTTGTGC 379446 Score = 122 bits (134), Expect = 1e-21 Identities = 334/503 (66%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||| ||||| |||||||||| | ||||| | | ||||||| ||||||||||| Sbjct 377560 TGGTCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCA 377619 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC-AT--TC 2069367 |||||||| || | |||| || ||||||||||||||| || | | || | Sbjct 377620 GTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGAT---CTTGCCCATGGTT 377676 Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 ||| | || | |||||| |||||| |||||||| | ||| |||||||||| Sbjct 377677 GGGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCG 377736 Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 ||||| | | || | | || || | ||||| || |||||| |||| ||||| | Sbjct 377737 GCCATCTGCACCA-CATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTAC 377795 Query 2069487 ATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCG 2069546 | || ||| | | | | || | ||| | |||||| | | | || |||| ||| Sbjct 377796 CT-CGCCGGGAA-TGTTGGGGAT----GTTCTGGATCGAGCCGTTCTCGGCAATGATGCG 377849 Query 2069547 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTT 2069606 | | | || | |||||| || | | | || || || |||| Sbjct 377850 ATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGTT 377909 Query 2069607 GACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTC 2069666 ||| || || ||||||| || ||||| ||| ||| |||||| |||| | ||| Sbjct 377910 GACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTC 377969 Query 2069667 GCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAG 2069726 | | |||| |||||||||| ||||||||||| | |||||||||||| |||| | || Sbjct 377970 GAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAG 378029 Query 2069727 CAGCGAGTTGCGCAGGCCGTACT 2069749 |||||||||||| | |||| || Sbjct 378030 CAGCGAGTTGCGAATCCCGTGCT 378052 Score = 120 bits (132), Expect = 5e-21 Identities = 174/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 2071771 GCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGC 2071830 || ||||| || |||||| ||| ||| || || || ||| ||||| | ||| Sbjct 378718 GCCTCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGG 378777 Query 2071831 GACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAA 2071890 | ||||||||| || | || || ||| || |||||| ||||||| || || Sbjct 378778 GTCCAGTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCACAG--CGCAA 378835 Query 2071891 --AAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGT 2071948 ||||| ||||| || ||| ||||||||||||||||||||| | || || || | | Sbjct 378836 GGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATT 378895 Query 2071949 CGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGC 2072008 | | || ||||||||||| |||||||||||| ||| ||||||||| |||||| || Sbjct 378896 CAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGC 378955 Query 2072009 CGCC 2072012 |||| Sbjct 378956 CGCC 378959 >seq2 Length=1393780 Score = 118 bits (130), Expect = 2e-20 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||| |||||||| | ||||| |||| ||||| || || |||||| | | Sbjct 81799 CCAACTACCTCGATATCAAGCCTTTGCTCGACGTGGGCTGCAAAACTGTCGCCAACATGA 81858 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 81859 TCAAGGGCAAGTCCCCCGAGGAAATCCGCAAGACTTTCAACATCA 81903 >seq32 Length=314566 Score = 113 bits (124), Expect = 7e-19 Identities = 177/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| ||| ||||||||||||||||| | | Sbjct 224949 TGACACCGGCCTTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCA 225008 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||||| || || ||| ||| ||| || ||||| Sbjct 225009 GGGAGATATTCTCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGA 225068 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | |||||||||||| |||||||| ||||| || ||| || | || ||||| Sbjct 225069 GAGCAACCAACAGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCA 225128 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||| || || ||| ||||| | ||| | | || |||| ||| || |||||| Sbjct 225129 TGCCGAGAAGAGCGCAC-GGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCA 225187 Query 794130 TCGATGATGAT 794140 ||| ||||||| Sbjct 225188 TCGGTGATGAT 225198 Score = 87.8 bits (96), Expect = 3e-11 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGA--GA 794434 || ||||||||||||||||||||||||||||||||||||| || | | ||| | | || Sbjct 225308 AGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-AC-GCGAATGCACCACTGA 225365 Query 794435 AAAAGATGCCCTCGACGGCGGCAAAG 794460 | |||||||||||||| ||||| ||| Sbjct 225366 AGAAGATGCCCTCGACAGCGGCGAAG 225391 >seq84 Length=87919 Score = 95.1 bits (104), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 2019192 GACCT-GCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTC 2019250 ||||| ||| || |||||||||||| | |||| ||||| || |||||| || | || || Sbjct 17631 GACCTTGCCTCCTGGCCGCCACAAGCTCGTCATACTCGACGAAGCCGACAGCATGACCTC 17690 Query 2019251 GGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGC 2019310 | || |||||||||||||| || ||||||| ||| |||||||||| || || || Sbjct 17691 TGGCGCACAGCAGGCCCTCCGCCGAACTATGGAAATATACTCCAACACGACTCGATTCGC 17750 Query 2019311 GCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTT 2019370 | || || ||| ||| | | || ||| | || ||| |||||||||||| | Sbjct 17751 ATTCGCGTGTAACCAGTCAAACAAAATTATTGAACCGCTGCAGTCACGTTGCGCCATCCT 17810 Query 2019371 GCGCTTTGC 2019379 || | ||| Sbjct 17811 TCGATATGC 17819 >seq36 Length=277325 Score = 91.5 bits (100), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 653749 CACGCCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGAT 653808 |||||| |||||| ||||||||||||||||||| |||||||| ||||| || | | | | Sbjct 33487 CACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGACAATTGCCCACTT 33428 Query 653809 GATGGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCC 653868 ||| ||| ||| || |||||||| || | |||||| | |||||| | ||| || Sbjct 33427 GATCGAGTGCCTGCTAAGCAAGGTGTCCACGCTGGAGGGCATGGAGGGCGATGCCACGCC 33368 Query 653869 GTTTGGCGGCGTCACCGT 653886 ||| || ||| || || Sbjct 33367 CTTTACCGACGTGACAGT 33350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916231613936021