Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq31 129 4e-25
seq3 129 4e-25
seq25 102 5e-17
>seq31
Length=345369
Score = 129 bits (142), Expect = 4e-25
Identities = 160/217 (74%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| ||||| |||| |||| |||||||| ||||| ||||| | ||| |||| ||||
Sbjct 217834 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 217775
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || || || || || ||||||| || |||||||| |||| | |||||||||||
Sbjct 217774 TCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 217715
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| ||||| ||||| || | ||||| ||| | ||| || || | ||| ||
Sbjct 217714 TGAATTTTCGACTTGAC--AT--TGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGAT 217659
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||||||| |||||||||||||| ||||| ||||||
Sbjct 217658 GGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 217622
Score = 114 bits (126), Expect = 8e-21
Identities = 157/217 (72%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| || || || | |||| |||||||| ||||| ||||| | ||| |||| | ||
Sbjct 218063 CAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTC 218004
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| ||||| || || || ||||||| ||||||||||| |||| | |||||||||||
Sbjct 218003 TTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTC 217944
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| ||||| ||||| || | ||||| || | ||| || || | ||| |
Sbjct 217943 TTGGATTTTCGCCTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGA 217888
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||| || ||||||||||| || |||||||||||
Sbjct 217887 TGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851
Score = 96.9 bits (106), Expect = 2e-15
Identities = 153/217 (71%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | || |||||| |||||||| ||||| | |||| | | | ||||
Sbjct 218518 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 218459
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || ||||| ||||| ||||| || | || | |||||||||||
Sbjct 218458 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 218399
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| ||||| || || || |||| || ||| | ||| || || | || ||
Sbjct 218398 TGAATTTTCGACTTCAC--AT--TATCAATGGTATCAGACGACTCCACCTCGAGCGTGAT 218343
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|||||| || || || ||||| || || |||||||||
Sbjct 218342 GGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 218306
>seq3
Length=1259731
Score = 129 bits (142), Expect = 4e-25
Identities = 160/217 (74%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||| | ||||||||||||||| ||||| ||||| | ||| |||| ||||
Sbjct 602980 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATC 603039
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || || ||||| ||||| |||||||| | || | |||||||||||
Sbjct 603040 CTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 603099
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || | ||||| || | ||| || || | ||| |
Sbjct 603100 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGA 603155
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||| |||||||||||||| || || ||||||||
Sbjct 603156 TGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192
>seq25
Length=408197
Score = 102 bits (112), Expect = 5e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||||||||| ||||| | ||| | || |||| ||||| ||||| || || ||||
Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || |||||||| | || | ||||||||||| | || || |||||
Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 312530
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || |||||| || | || |||||||| ||||| |||||||| ||||
Sbjct 312531 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 312590
Query 34968 A 34968
|
Sbjct 312591 A 312591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692248256041
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |