Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq31 129 4e-25 seq3 129 4e-25 seq25 102 5e-17 >seq31 Length=345369 Score = 129 bits (142), Expect = 4e-25 Identities = 160/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| |||| |||||||| ||||| ||||| | ||| |||| |||| Sbjct 217834 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 217775 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || || ||||||| || |||||||| |||| | ||||||||||| Sbjct 217774 TCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 217715 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| ||||| || | ||||| ||| | ||| || || | ||| || Sbjct 217714 TGAATTTTCGACTTGAC--AT--TGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGAT 217659 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||||| |||||||||||||| ||||| |||||| Sbjct 217658 GGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 217622 Score = 114 bits (126), Expect = 8e-21 Identities = 157/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || || || | |||| |||||||| ||||| ||||| | ||| |||| | || Sbjct 218063 CAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTC 218004 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || || || ||||||| ||||||||||| |||| | ||||||||||| Sbjct 218003 TTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTC 217944 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | ||||| ||||| || | ||||| || | ||| || || | ||| | Sbjct 217943 TTGGATTTTCGCCTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGA 217888 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || ||||||||||| || ||||||||||| Sbjct 217887 TGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || |||||| |||||||| ||||| | |||| | | | |||| Sbjct 218518 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 218459 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| ||||| || | || | ||||||||||| Sbjct 218458 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 218399 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| || || || |||| || ||| | ||| || || | || || Sbjct 218398 TGAATTTTCGACTTCAC--AT--TATCAATGGTATCAGACGACTCCACCTCGAGCGTGAT 218343 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||| || || || ||||| || || ||||||||| Sbjct 218342 GGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 218306 >seq3 Length=1259731 Score = 129 bits (142), Expect = 4e-25 Identities = 160/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||||||||||||||| ||||| ||||| | ||| |||| |||| Sbjct 602980 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATC 603039 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| ||||| |||||||| | || | ||||||||||| Sbjct 603040 CTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 603099 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || || | ||| | Sbjct 603100 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGA 603155 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| |||||||||||||| || || |||||||| Sbjct 603156 TGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192 >seq25 Length=408197 Score = 102 bits (112), Expect = 5e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| | ||| | || |||| ||||| ||||| || || |||| Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || |||||||| | || | ||||||||||| | || || ||||| Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 312530 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| || | || |||||||| ||||| |||||||| |||| Sbjct 312531 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 312590 Query 34968 A 34968 | Sbjct 312591 A 312591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692248256041