Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq31 122 2e-22
seq3 86.0 1e-11
>seq31
Length=345369
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||||| || || || || || || || || || | ||| |||| ||
Sbjct 218521 CGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCA 218462
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| |||| || ||||| ||||| || || |||||
Sbjct 218461 TCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTG 218402
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|||||||| || | || ||||| ||||| |||||| | || || || | || ||
Sbjct 218401 TCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATG 218342
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || |||| |||||| || || ||||||||
Sbjct 218341 GTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307
Score = 113 bits (124), Expect = 9e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|||||||| | || || || ||||| ||||| || || || || | || | | |||
Sbjct 218065 CGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 218006
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| |||||||| ||||||||||| | | ||| || || || || || || |||||
Sbjct 218005 TCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTG 217946
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| || || || || ||||| || || || || || || || |||| || ||
Sbjct 217945 TCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATG 217886
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | ||||| || || ||||||||
Sbjct 217885 GTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851
Score = 111 bits (122), Expect = 3e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
|||||| || | |||||| || || || ||||| || || || || | | ||| ||
Sbjct 218294 ACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCC 218235
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || || || || || |||||||| |||| || || || || || || ||||||||
Sbjct 218234 GTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTT 218175
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||||||||| | || || || ||||| || || | || ||||||| || ||
Sbjct 218174 GTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGAT 218115
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || || |||| ||||| ||||| || |||||
Sbjct 218114 TGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079
Score = 98.7 bits (108), Expect = 2e-15
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || || ||||| | || || || ||||| ||||| || || || || |
Sbjct 217851 TACCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 217792
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | || ||||| || ||||| ||||||||||| | | || || || || |
Sbjct 217791 CCAGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCG 217732
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| |||||||| || | || ||||| || || || ||| || || |
Sbjct 217731 GGATGCCCTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCA 217672
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || || ||||| || || | |||||||| || || |||||
Sbjct 217671 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 217623
>seq3
Length=1259731
Score = 86.0 bits (94), Expect = 1e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || |||||||| || || ||||| || || || || | || | | ||
Sbjct 602978 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 603037
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| |||| || || || || || || || |||||
Sbjct 603038 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 603097
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| | || ||||| || || || || || || || || | || ||
Sbjct 603098 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 603157
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | ||||| || || ||||||||
Sbjct 603158 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981825451427121
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |