Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1 360 2e-94
seq3 145 7e-30
seq31 122 8e-23
seq25 116 4e-21
seq32 102 8e-17
>seq1
Length=1559860
Score = 360 bits (398), Expect = 2e-94
Identities = 1228/1883 (65%), Gaps = 83/1883 (4%)
Strand=Plus/Plus
Query 147939 GCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAG 147998
|| |||| ||| ||||||| ||||||||||| |||||||| |||| ||| ||
Sbjct 377587 GCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCA 377646
Query 147999 TCGTGCACCGACGACATGAGCGTGTAC---GTCGGGTGCGGCACAAACAGATTAAACGAC 148055
||||| ||||| ||| | || | || |||| | || | || | |||
Sbjct 377647 AAGTGCATCGACG---TGATCTTGCCCATGGTTGGGTCCTTCATGTGAATGTTGAGAGAC 377703
Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT----CA-ATGAGTCGCTTTA 148110
||| |||||| || || || || ||||| |||||||| | || |||| ||||
Sbjct 377704 TGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCCATCTGCACCACATGA--CGCTG-- 377759
Query 148111 TCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGC 148170
| || |||||| ||||||||||||| ||| | | |||||||| | ||||
Sbjct 377760 -CGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCTCGCCGGGAATGTTGGGGATGT 377818
Query 148171 GCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGA 148230
||| | ||||||| | |||| || |||| ||| |||| | | || |
Sbjct 377819 TCTGGATCGAGCCGTTCTCGGCAATGATGCGATTCTTCATGGCGTCTGACCACAGACCCA 377878
Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290
|||| || || | || || | | || || ||||| |||||||| || || ||||
Sbjct 377879 TGTCGACGAGATCCTTGAGAAGCCATGGGTTGACGACCTGGAACTCGCCCGCCAGGACGC 377938
Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350
| ||| | || | |||| ||| | || || || ||||||||||||||| ||||||||
Sbjct 377939 GTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCG 377998
Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410
|| | |||||||||||| ||| | ||||||||||||||| | ||| | | || |
Sbjct 377999 ACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGA 378058
Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470
| | ||| || | |||| ||||| | ||||| |||||||||||||||||
Sbjct 378059 TCTGCTCCTTGAGGGAATCCCACTCCCACAAGTCGGACGGCGTCACGTTCCACATGTCAA 378118
Query 148471 ACTGCAGAATGCC----GCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGC 148526
||||||| ||||| | ||| ||| | | |||| | ||| | ||| || || | |
Sbjct 378119 ACTGCAGGATGCCTTCAGAGGC---CGGAGAT-CCCTTGAACGTGGAGTAGGGACCCTCC 378174
Query 148527 GCCGCCGCCAGTTCGCAGCT-CGCC-TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTT 148584
|| ||||| || || | |||| || || ||| ||| ||| || ||||| ||| |
Sbjct 378175 TCCTTGGCCAGCTC-CACCGACGCCGTCAAG-GCGGCGTGGTAGATGGTCTCAAAAATCT 378232
Query 148585 GCCTGTTGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACG 148641
|| |||| ||| ||| | |||| || | ||||| || ||| | || |
Sbjct 378233 GCTTGTTCAGCT-CGCGAGC--CTCGGGAGACTCAAAGGGCATGCGAAGCGCAAGGAAGG 378289
Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701
||||||| | ||| || || || || |||||||| || || |||||| | ||| |
Sbjct 378290 CGTCGGCCAAGCCTTGAACACCGACACCAATGGGACGATGCCGCATGTTGCTGTTGCGTG 378349
Query 148702 CGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761
| | || || ||||||||| |||||||||||||| ||||| || || |||||
Sbjct 378350 CTTCTTGGACGGGGTAGTGGTTGACGTCGATGATCTTGTTGAGATTTCGGACAACCACGC 378409
Query 148762 TTGTAATTCTGCGCAGCAATTCAAAATCGTACTTGTCATCTACGATG----CATCG--GT 148815
|| | | ||||| || || ||||||||| | | || | || | |
Sbjct 378410 GGGTGACGTCGTGCAGCTTTTGGAAGTCGTACTTGCCTTGGTCGTAGTCCACAAAGGCGG 378469
Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875
|| ||| | ||||| || ||||| ||||| ||| || ||||| |||||| | |
Sbjct 378470 GCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAA 378529
Query 148876 TCTCGGCGCACAGATT---GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGC 148932
|||||| ||| || || ||||| || | |||| |||||| || |||||||| |
Sbjct 378530 TCTCGGTGCAGAGGTTGGAGCTGCGAATGGT---TCCCAAGTTCTTCTGGTTGCTCTTCC 378586
Query 148933 TGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTA 148992
||||||| |||||||||||||| | || |||||| || ||| | || | |
Sbjct 378587 TGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGA 378646
Query 148993 T---GAACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTGC 149045
| | ||| ||| | ||| ||||| | ||||| || || || || ||
Sbjct 378647 TCGAGTACC---ACAGCTTCTGGGCGCGGATTGTCTTGCGGC----CACGGCCTTCGCGC 378699
Query 149046 TCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCAC 149105
||||| ||||| ||| ||| | ||||||||||| ||| |||| || |||||
Sbjct 378700 TCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCAT 378759
Query 149106 TTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCG 149165
| || ||||||||||| | ||| |||| | | | || |||||||| || || |||
Sbjct 378760 TCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCG 378819
Query 149166 GGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC---GCCCATGTTG 149222
|| | ||| ||||| | ||||||||| || || | |||| | ||| |||
Sbjct 378820 GGGATCCACAGCGCAAGGAAGAGGTCGCGAGC---GCGGACTTCCTCCTTGCCGTGGTTC 378876
Query 149223 CGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGC 149282
| || | || | || | || |||||||| ||||| | ||| | ||||
Sbjct 378877 TTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAG 378936
Query 149283 GCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGA 149339
|||||| ||| |||||||| |||||||||| | | ||||||| || |||||
Sbjct 378937 GCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGC 378996
Query 149340 ACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCT 149399
| ||| || | | ||| | | |||||||| || | |||| ||| ||
Sbjct 378997 AGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCA 379056
Query 149400 CGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGC-AGTC 149458
|| | ||| ||||| | |||||| |||||| | || || || |||| ||||
Sbjct 379057 CGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTC 379116
Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518
||| || ||||||||||||||||||||| ||||||| | || ||||||||
Sbjct 379117 -TTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGA 379175
Query 149519 GCACATTTGCGGAAA---ACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAA 149575
| | | || || | | ||||||| || ||| | ||| || |||||| || ||
Sbjct 379176 GGAAA---GCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAA 379232
Query 149576 ATATTT-CTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGA 149634
|||| |||| ||| | | ||| | || || ||||| || |||| || || ||
Sbjct 379233 GAATTTACTGG-ACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAGA 379291
Query 149635 TGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTT 149694
|||| | || || ||||| | ||| ||||| ||||| || | | ||| | | |
Sbjct 379292 TGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGCT 379351
Query 149695 TGAGCAAGTAGCCGTT--TTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752
| || | || || | || || |||||| | |||||||||| |||| ||||| |
Sbjct 379352 TCAGGAGATA--CGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTCTCT 379409
Query 149753 GCCGTGGTCAATGGCGGCGTCGA 149775
||| ||||||| | |||||
Sbjct 379410 CTCGTAAACAATGGCAGAGTCGA 379432
>seq3
Length=1259731
Score = 145 bits (160), Expect = 7e-30
Identities = 158/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | |||| ||| ||||| || ||||| ||| ||| ||| | | | ||||||||
Sbjct 602987 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCGAG 603045
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| || | ||||| |||||||||||||| |||||||| |||||||| |||
Sbjct 603046 CTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGAT 603105
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | || | ||||||| | |||||| |||| ||||| ||| || ||
Sbjct 603106 CTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCC 603165
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || ||||||||||||||
Sbjct 603166 CGTGAGGGTCTTGACGAAAATCTGCAT 603192
>seq31
Length=345369
Score = 122 bits (134), Expect = 8e-23
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | |||||| || ||||| || ||||| ||| ||| ||| | | | || |||||||
Sbjct 217826 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCTTCGAGCT 217768
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
| || || || | || | |||||||||||||| |||||||| |||||||| ||| |
Sbjct 217767 GTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC-TTGAATT 217709
Query 133576 TTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| | ||||| | || | ||||| | | |||||| |||| ||||| ||| || |||
Sbjct 217708 TTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCG 217649
Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGG 133662
|| || || |||||||| || |||||||
Sbjct 217648 GTGAGGGTCTTTACGAAGATTTGCATGG 217621
Score = 116 bits (128), Expect = 4e-21
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| ||| || ||||||||||||||||||
Sbjct 218276 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCCTCGAGCTGCTTGCC 218217
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || || |||||||||||||| || || ||||||||||| ||||| |||
Sbjct 218216 GGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCTTGAATCTTCGACTT 218157
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| ||||| | | ||| || || | |||| ||||| || ||||| ||
Sbjct 218156 GACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTTTTTCCCGTCAGTGT 218097
Query 133643 TTTTACGAAAATCTGCATG 133661
|| || || || ||||||
Sbjct 218096 CTTGACAAAGATTTGCATG 218078
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | |||||| || ||||| || ||||| ||| ||| ||| ||| ||||| ||
Sbjct 218054 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGTTG 217995
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
||||| || | || | || ||||||||||| |||||||| |||||||| ||| ||
Sbjct 217994 TTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTT 217935
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||||| | || | ||||||| | |||||| || | ||||| ||| || || ||
Sbjct 217934 CGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCAGT 217875
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
|| || || ||||| ||||||||
Sbjct 217874 GAGGGTCTTGACGAAGATCTGCAT 217851
Score = 109 bits (120), Expect = 5e-19
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| || || || ||||| ||| | | || | ||||| |||||||| ||
Sbjct 218503 GTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCA 218444
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582
|| | ||||| |||||||| || ||||| ||||| |||||||| ||| ||| | |||
Sbjct 218443 GCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT-TGAATTTTCGACTT 218385
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | |||| || || | | |||||| |||| |||| ||| || |||||||| ||
Sbjct 218384 CACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGT 218325
Query 133643 TTTTACGAAAATCTGCATG 133661
|| |||||||||||||||
Sbjct 218324 CTTGACGAAAATCTGCATG 218306
>seq25
Length=408197
Score = 116 bits (128), Expect = 4e-21
Identities = 136/181 (75%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531
||||| || ||||| ||| ||| || | | | ||||| ||||||||||| || | ||
Sbjct 312413 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCA-TCCTCCAGCTGCTTGCCAGCAAAGAT 312471
Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591
| ||||||||||||||||||||||| |||||||| |||||| ||||| | ||
Sbjct 312472 CAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTC 312531
Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651
| |||||||| || ||| || |||| |||| ||| ||||| ||||| || || || ||
Sbjct 312532 GATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 312591
Query 133652 A 133652
|
Sbjct 312592 A 312592
>seq32
Length=314566
Score = 102 bits (112), Expect = 8e-17
Identities = 160/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698
|||||| |||||||| ||||||| |||||||| || ||||| || ||||| || ||
Sbjct 225247 CAGGCATGCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGT 225306
Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAA-- 120756
|| |||||||||| ||| | |||||| | || |||| || || ||| | |
Sbjct 225307 AAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAA--TGCACCACTG 225364
Query 120757 AAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG 120816
||||| | |||||| || ||| ||||| |||| || | ||| || | | | ||||
Sbjct 225365 AAGAAGATGCCCTCGACAGCGGCGAAGGCAACCAATCGTTGGGCGAAGCTAGACTCCTTG 225424
Query 120817 CTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863
| |||||| |||||||| ||||||||||| || | ||| ||
Sbjct 225425 TCTTGGATCCAGCGGATGGCCCAGTCGGCCTTTTTACGGATGCAAGG 225471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483419960056360
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