Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1 201 1e-46
seq31 118 1e-21
>seq1
Length=1559860
Score = 201 bits (222), Expect = 1e-46
Identities = 982/1537 (64%), Gaps = 43/1537 (3%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || |||||||||||||| || |||| | || | ||| ||| | |||
Sbjct 377908 TTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGC 377967
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || |||| || ||||| | || || | ||||| || || |||||| ||| | |
Sbjct 377968 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGC 378027
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| || || || || | |||| | | ||| | ||||| | | | ||| ||||||
Sbjct 378028 AGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCAC 378087
Query 147073 A--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGAC 147130
| ||| || |||||||||||||||||||| |||| || | ||| | ||| |||
Sbjct 378088 AAGTCG--GACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAG 378145
Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAGCTTGCCTCGAGC 147189
|| |||||| | |||| || || || |||| | ||| | | || ||
Sbjct 378146 ATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAG- 378204
Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249
|| | | ||| ||||| || || || ||||| || || || || |||
Sbjct 378205 GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCA 378264
Query 147250 TAAGGCATACGCAGAAGCACA---AAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306
| ||||| | ||||| || ||||| |||||||| || || | |||||| || ||
Sbjct 378265 AAGGGCATGC---GAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATG 378321
Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAA 147364
|| |||||| |||||| | | || ||| | | ||| ||||||||| || |
Sbjct 378322 GGACGATGCCGCATGTTGCT--GTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGA 378379
Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG-AGTTTCTCGAAATCA 147423
| ||||||||||| || || || || || || | || || || || | ||| ||
Sbjct 378380 TGATCTTGTTGAGATTTCGGACAACCACGCGGGTGA-CGTCGTGCAGCTTTTGGAAGTCG 378438
Query 147424 TAAGTCCCGTCTTCGACACGTACGCATTG--GTTCACGGCGATAGACGCCAGATTGCAGA 147481
|| | || | ||| || | || | | || ||| | || || || |||||||
Sbjct 378439 TACTTGCCTTGGTCG--TAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGA 378496
Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541
|||| ||| |||| | | ||||| | || |||| ||| |||||| || |
Sbjct 378497 CGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAA 378556
Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601
|| |||||| || | ||| ||||| |||| ||||| || ||| | ||||| | |
Sbjct 378557 TGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGG 378616
Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACCC 147661
| ||| |||||| || | || | ||| | ||| | ||| || || |
Sbjct 378617 GGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTG 378676
Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721
|| || ||||| ||| |||||| || ||||| |||||||||||||||||
Sbjct 378677 TCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGT 378736
Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781
|||| ||||| || || || || | | || ||||| || | ||| | | | | |
Sbjct 378737 AGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCT 378796
Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841
|| || ||| || || || || | ||||||||| | || ||||| || |
Sbjct 378797 CGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGA 378856
Query 147842 AATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGG 147901
||||| ||| ||| | | | || ||| | | ||| |||||||||||||
Sbjct 378857 CTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGG 378916
Query 147902 GTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCA 147958
| || | ||||| ||| | || || ||| || ||||| |||||||| | |
Sbjct 378917 GCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGG 378976
Query 147959 CCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAAT 148018
| ||||||| || || |||| |||||| | | |||| ||| ||||||||||||
Sbjct 378977 CAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGG 379036
Query 148019 TGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACT 148078
|| | | ||| || || | ||| ||||| | ||| || |||||| | |
Sbjct 379037 CAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTT 379096
Query 148079 TTGATATGGCAGCGCAA-TC-GCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTT 148136
| || || |||||| || | |||| ||||||||| ||||||||||| | ||
Sbjct 379097 TAGAAATCATGGCGCAAGTCTTGAGAGTGTC--GTAGATGCCCTCGATGCTGTCTTCCTT 379154
Query 148137 GACGCCAAGCAAAAAACACGAACACATTTG---CGGAATCCGCGTTCCCGCCGAGAAAAG 148193
| | | | | || ||||| | | || | || |||| ||||| ||| ||
Sbjct 379155 CATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGA---GGCGTGCCCGCGTTGAAGAG 379211
Query 148194 GGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAGCG 148251
||| || ||||| || || ||||| | || ||| | | || || || | ||
Sbjct 379212 GGTAGGTGAGGCGTGGGTGAAGAATTTACTGGA--CATGAGGTTGTAGGTTTCCAGGACG 379269
Query 148252 TCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGT 148311
|| |||| ||| || ||||| | || || ||||||| ||||||||| ||||||
Sbjct 379270 CGCTCAATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGT 379329
Query 148312 TCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCAT-TTTCGAGGGTTTTGTAACCAA 148369
||| ||| |||| || | ||| || ||||| | || || || || ||| ||||||
Sbjct 379330 TCGACAATCTTG-CCGTCCAGCTTCAGGAGATA-CGATCGCTCCAGCGTCTTGAAACCAA 379387
Query 148370 AGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406
|||||| || | || ||| ||||||| | |||||
Sbjct 379388 AGTACTGATAGTTGAAGTCTCTCTCGTAAACAATGGC 379424
>seq31
Length=345369
Score = 118 bits (130), Expect = 1e-21
Identities = 160/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||| | |||| || | | ||||| |||||||||||||||||| | |||
Sbjct 218528 ACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGT 218469
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
| | ||| || ||||| ||||| | | |||| || ||||| ||||| ||||| |||||
Sbjct 218468 TCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCC 218409
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || |||||| |||| | || | ||||| | || |||||| ||||
Sbjct 218408 CTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAG 218349
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
||| | || || || ||||| || || | |||||||||||||
Sbjct 218348 CGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 218306
Score = 100 bits (110), Expect = 3e-16
Identities = 156/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||| | ||||| ||| | | | || || || || |||||||||||| || |||
Sbjct 217844 ACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGT 217785
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||||||||||||||| | | |||| | ||||| || || || || |||||
Sbjct 217784 GCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCC 217725
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || |||||| || | | || | ||| || | | |||||| ||||
Sbjct 217724 CTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAG 217665
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || || || || || |||| ||| || ||||||
Sbjct 217664 GGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 217622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476610371888040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |