Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 201 1e-46 seq31 118 1e-21 >seq1 Length=1559860 Score = 201 bits (222), Expect = 1e-46 Identities = 982/1537 (64%), Gaps = 43/1537 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||||||||| || |||| | || | ||| ||| | ||| Sbjct 377908 TTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGC 377967 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | ||||| || || |||||| ||| | | Sbjct 377968 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGC 378027 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || || | |||| | | ||| | ||||| | | | ||| |||||| Sbjct 378028 AGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCAC 378087 Query 147073 A--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGAC 147130 | ||| || |||||||||||||||||||| |||| || | ||| | ||| ||| Sbjct 378088 AAGTCG--GACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAG 378145 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAGCTTGCCTCGAGC 147189 || |||||| | |||| || || || |||| | ||| | | || || Sbjct 378146 ATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAG- 378204 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || | | ||| ||||| || || || ||||| || || || || ||| Sbjct 378205 GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCA 378264 Query 147250 TAAGGCATACGCAGAAGCACA---AAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 | ||||| | ||||| || ||||| |||||||| || || | |||||| || || Sbjct 378265 AAGGGCATGC---GAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATG 378321 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAA 147364 || |||||| |||||| | | || ||| | | ||| ||||||||| || | Sbjct 378322 GGACGATGCCGCATGTTGCT--GTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGA 378379 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG-AGTTTCTCGAAATCA 147423 | ||||||||||| || || || || || || | || || || || | ||| || Sbjct 378380 TGATCTTGTTGAGATTTCGGACAACCACGCGGGTGA-CGTCGTGCAGCTTTTGGAAGTCG 378438 Query 147424 TAAGTCCCGTCTTCGACACGTACGCATTG--GTTCACGGCGATAGACGCCAGATTGCAGA 147481 || | || | ||| || | || | | || ||| | || || || ||||||| Sbjct 378439 TACTTGCCTTGGTCG--TAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGA 378496 Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541 |||| ||| |||| | | ||||| | || |||| ||| |||||| || | Sbjct 378497 CGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAA 378556 Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601 || |||||| || | ||| ||||| |||| ||||| || ||| | ||||| | | Sbjct 378557 TGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGG 378616 Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACCC 147661 | ||| |||||| || | || | ||| | ||| | ||| || || | Sbjct 378617 GGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTG 378676 Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721 || || ||||| ||| |||||| || ||||| ||||||||||||||||| Sbjct 378677 TCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGT 378736 Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781 |||| ||||| || || || || | | || ||||| || | ||| | | | | | Sbjct 378737 AGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCT 378796 Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841 || || ||| || || || || | ||||||||| | || ||||| || | Sbjct 378797 CGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGA 378856 Query 147842 AATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGG 147901 ||||| ||| ||| | | | || ||| | | ||| ||||||||||||| Sbjct 378857 CTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGG 378916 Query 147902 GTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCA 147958 | || | ||||| ||| | || || ||| || ||||| |||||||| | | Sbjct 378917 GCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGG 378976 Query 147959 CCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAAT 148018 | ||||||| || || |||| |||||| | | |||| ||| |||||||||||| Sbjct 378977 CAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGG 379036 Query 148019 TGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACT 148078 || | | ||| || || | ||| ||||| | ||| || |||||| | | Sbjct 379037 CAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTT 379096 Query 148079 TTGATATGGCAGCGCAA-TC-GCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTT 148136 | || || |||||| || | |||| ||||||||| ||||||||||| | || Sbjct 379097 TAGAAATCATGGCGCAAGTCTTGAGAGTGTC--GTAGATGCCCTCGATGCTGTCTTCCTT 379154 Query 148137 GACGCCAAGCAAAAAACACGAACACATTTG---CGGAATCCGCGTTCCCGCCGAGAAAAG 148193 | | | | | || ||||| | | || | || |||| ||||| ||| || Sbjct 379155 CATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGA---GGCGTGCCCGCGTTGAAGAG 379211 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAGCG 148251 ||| || ||||| || || ||||| | || ||| | | || || || | || Sbjct 379212 GGTAGGTGAGGCGTGGGTGAAGAATTTACTGGA--CATGAGGTTGTAGGTTTCCAGGACG 379269 Query 148252 TCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGT 148311 || |||| ||| || ||||| | || || ||||||| ||||||||| |||||| Sbjct 379270 CGCTCAATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGT 379329 Query 148312 TCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCAT-TTTCGAGGGTTTTGTAACCAA 148369 ||| ||| |||| || | ||| || ||||| | || || || || ||| |||||| Sbjct 379330 TCGACAATCTTG-CCGTCCAGCTTCAGGAGATA-CGATCGCTCCAGCGTCTTGAAACCAA 379387 Query 148370 AGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 |||||| || | || ||| ||||||| | ||||| Sbjct 379388 AGTACTGATAGTTGAAGTCTCTCTCGTAAACAATGGC 379424 >seq31 Length=345369 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | ||||| |||||||||||||||||| | ||| Sbjct 218528 ACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGT 218469 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | | ||| || ||||| ||||| | | |||| || ||||| ||||| ||||| ||||| Sbjct 218468 TCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCC 218409 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || |||||| |||| | || | ||||| | || |||||| |||| Sbjct 218408 CTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAG 218349 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || || ||||| || || | ||||||||||||| Sbjct 218348 CGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 218306 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| ||| | | | || || || || |||||||||||| || ||| Sbjct 217844 ACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGT 217785 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||||||||||||||| | | |||| | ||||| || || || || ||||| Sbjct 217784 GCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCC 217725 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || |||||| || | | || | ||| || | | |||||| |||| Sbjct 217724 CTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAG 217665 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || || |||| ||| || |||||| Sbjct 217664 GGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 217622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610371888040