Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq8 141 1e-28
>seq8
Length=988098
Score = 141 bits (156), Expect = 1e-28
Identities = 276/402 (69%), Gaps = 12/402 (3%)
Strand=Plus/Plus
Query 147105 CACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGG 147163
|||||| ||||| ||| | | |||||| ||||||||||||||| | |||||||| |
Sbjct 209012 CACGTAGAACTGCGCAAAC-ACGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCG 209070
Query 147164 GGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCG---GGGTTCCTCTTAATCTCTTCGA 147220
|||||| || | || | ||||| ||| || | |||| | || ||||
Sbjct 209071 CGTTCCACGC---GCTCATGATGATCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGA 209127
Query 147221 TAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACC 147280
| || |||||||| || |||| |||| ||||| ||| | ||||||||||
Sbjct 209128 TGACGTCGGCGAGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACT 209187
Query 147281 TGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGT 147340
|| |||||||||| ||||||||||||||| || || || |||||||| || | ||
Sbjct 209188 CTGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGT 209247
Query 147341 GCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTC 147400
||| | |||| | | ||| |||||| | ||||||| | ||||||| || || |
Sbjct 209248 GCGTCAGGCCCAGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGC 209307
Query 147401 C--CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTC 147458
| | | || ||||| || ||||| ||| |||| ||||||||| |||||||| |
Sbjct 209308 CGACGTCGCTGAGAG--CCCGGGAGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGC 209365
Query 147459 CAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGG 147500
| || | | | ||| |||| ||| ||||| || || ||
Sbjct 209366 GACGACGGCGCGCAGAAACACCCGCTTCGTGGTGAGGAGCGG 209407
Score = 131 bits (144), Expect = 2e-25
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 146870 AAATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCA 146929
|||||| ||||| |||||| || || | || ||| ||| | || |||| ||||
Sbjct 208684 AAATCTCGAGCTCGGGGAACTCGCGAGGCTCCCGCTCCACCTGCACGTTGAGGGCCTCCT 208743
Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989
| || | | ||||||||||||||| |||| | ||| | | || || | |||
Sbjct 208744 CATGATCGGCGTAGACGTGCGCGTCGCCCATGACGTGGGTCAGGCTGCCGGGTATCAGGT 208803
Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049
|| |||||| |||||||||| ||||| |||| ||||||||| |||||||| || || |
Sbjct 208804 CGCACACGTGCGCCACCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTGAACGGCACGC 208863
Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086
| || |||||||| | |||| |||||||||||||||
Sbjct 208864 CGAGACCCATGTCGCAGGACCGCTGGTACAGCTGGCA 208900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583486986189600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |