Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-27 seq1 134 2e-25 seq36 107 3e-17 seq32 105 1e-16 >seq6 Length=1035304 Score = 141 bits (156), Expect = 1e-27 Identities = 269/384 (70%), Gaps = 24/384 (6%) Strand=Plus/Minus Query 1816027 CTCAATGTAGGTGGCGTCGGCGCCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTT 1816086 ||| ||| | ||||||| |||||| |||| || |||||||||||||||||| Sbjct 761762 CTCGATGCACATGGCGTCCAGGCCGTCCTCGCCGTAGAGGAACTGGACAATGTCGCCGAG 761703 Query 1816087 GGCGTTGCGCACGAGGCCGCCG---CGCTTGATCTGCAGGCTCTCCATCGACTTGATGCA 1816143 | ||||||||| ||| || ||| | || ||| ||| | || ||||| Sbjct 761702 CGAGTTGCGCACCGTCCCGTCGTACCGCGCGCTC---AGGTCCTCGAGCGCCTTGACCAG 761646 Query 1816144 CCGGCGCTGGATGTAGCCACGTC-CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGC 1816202 ||| |||||||||||||| |||| |||| ||||||||||||||||||| |||||||||| Sbjct 761645 CCGCCGCTGGATGTAGCC-CGTCTCGGCCGTCTTGACGGCCGTGTCGATGAGGCCCTCGC 761587 Query 1816203 GGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGC 1816262 | ||| | || ||| || || | |||| || | ||||||||| ||||||||| Sbjct 761586 GACCGGCCATGGCGTGGAAGAAGAACTCGGTCGGCGTCAGGCCGCGCAGGTACGAGTTCT 761527 Query 1816263 GCACAAAGCCGCGGCTCTCGGGCGGCGGCACGGCCTCGG---CGTGCCGGTAGCAGCCCA 1816319 || ||||||||| |||||||| || ||| || ||| ||| ||| | || Sbjct 761526 CGACGAAGCCGCGGGCCTCGGGCGAGTAGTCGTCCTTGGTGAAGTG-CGGCAGC-GTCCG 761469 Query 1816320 GTGTGCGCGAACCCGACTCGGAGTGGATGCGCTGGCCCTCATTGCTCTGCTGGCCCACGC 1816379 || | ||| || | || ||||||||| |||||| |||||||||| || | Sbjct 761468 GTAT--TTGAAGCCAA-----AGGGGATGCGCTTGCCCTCGACAATCTGCTGGCCGAC-C 761417 Query 1816380 A--GCCGCACATCTGGGTGATGTT 1816401 | |||| |||||||| |||||| Sbjct 761416 AGGGCCG-TCATCTGGGAGATGTT 761394 Score = 122 bits (134), Expect = 1e-21 Identities = 253/374 (68%), Gaps = 6/374 (2%) Strand=Plus/Minus Query 1812944 ACGTCCGAGATGGCCGTGCCGATGGGCGCCGCCTGGCCCAGGATGATGGGCTCCGTGACC 1813003 ||||| || || | ||||| ||||||||| ||||||||| |||| | |||| || Sbjct 763477 ACGTCAAAGTTGCCGGTGCCCATGGGCGCCAGCTGGCCCAGCATGACGTTTTCCGAGAT- 763419 Query 1813004 GAGCCGTCGGTGATCTTGTCGGTCTCGGCAAAGGCCGCCGCGTCAAAGAGGATGTCGACA 1813063 |||| ||| || ||| ||| | |||||| || || | |||||| ||||| Sbjct 763418 --GCCG-CGGCAGTC--GTCAAGCTCCCCGGTGGCCGCGGCCTCGAGGAGGATCTCGACC 763364 Query 1813064 GTCTCCTCAAAAGAGGCGCGCGACAGAAAACCGTGGTCGGCGCGGTTAAAGCCGTGCCGC 1813123 |||||||| || ||| |||| ||| || |||||||||||| | ||||||||| Sbjct 763363 GTCTCCTCGAAGGAGCAGCGCATCAGGGCCCCCGTGTCGGCGCGGTTGATGCCGTGCCGG 763304 Query 1813124 GTGACGGCCACCACTGAGCCGCGGCAACACATGGTGTCGGTGGCCAGCGCAAAGTGGCGG 1813183 ||||||||| | ||| ||| | |||| |||| | ||| || | ||||||| Sbjct 763303 GTGACGGCCGAGATGCTGCCCCGGTACGTCATGACGTCGACGAGCAGGGCGATGTGGCGG 763244 Query 1813184 TCGTTGACATAGGTGCCGTCAAAGGAGATCACGGCCTTGATCTCGGAAAAGAGCACGGCC 1813243 | |||||| |||| ||||||||||| | |||| | | ||| | ||| ||| | Sbjct 763243 TGGTTGACGTAGGAGCCGTCAAAGGCCAGCACGTTGGTCAGCTCCTTGACCAGCGCGGAC 763184 Query 1813244 ACGGCAGCCTCTATGCCCAGCACGGCCGCCACGCGGTTGATGTCGTTGGTGTGGCTGCGC 1813303 || ||||| ||||| | || | | | | || ||||||||||| | |||| Sbjct 763183 CGCGCGGCCTCGATGCCAAAGACCTCGACAATCTGCCAGAGGTCGTTGGTGTAGGTGCGG 763124 Query 1813304 GAGGCATCCACGCC 1813317 | || |||||||| Sbjct 763123 GTGGGGTCCACGCC 763110 >seq1 Length=1559860 Score = 134 bits (148), Expect = 2e-25 Identities = 334/503 (66%), Gaps = 17/503 (3%) Strand=Plus/Minus Query 259680 AGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACT 259739 ||||||| |||| |||||| ||||||| ||| ||||||| ||| ||||| Sbjct 379447 AGCACAAAGAGGAGCTCGACTCTGCCATTGTTTACGAGAGAGACTTCAACTATCAGTACT 379388 Query 259740 TTGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGC 259799 ||||| | ||| || || || || || || || || | | ||||| | Sbjct 379387 TTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGAAGCTGGACGGCAAGATTGTCGAAC 379328 Query 259800 GGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACA 259859 | || ||| | ||| |||||||||| || | ||| | |||| || |||| Sbjct 379327 GACCTCAGCACATGATCATGCGTGTTGCTGTCGGCA--TCTGGG------GA----GACA 379280 Query 259860 ATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCTCA 259918 | | |||| ||| || | |||||| | |||||| ||| | || |||||| Sbjct 379279 ACA---TTGAGCGCGTCCTGGAAACCTACAACCTCATGTC-CAGTAAATTCTTCACCCAC 379224 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | || || ||||| || || |||||||| | ||| ||| |||||||| || Sbjct 379223 GCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTC 379164 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || |||||||||||||| ||||| |||||| ||||| | Sbjct 379163 GTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATG 379104 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 || || || ||||||||| ||||| | || ||| | || || | || || Sbjct 379103 ATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCC 379044 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || |||||||||||| || |||||| | || |||||||| || || || ||| Sbjct 379043 TACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAAC 378984 Query 260159 GACACGGCGCGCTACGTCGACCA 260181 |||| || | ||||||||||| Sbjct 378983 AACACTGCCAGATACGTCGACCA 378961 Score = 129 bits (142), Expect = 8e-24 Identities = 337/509 (66%), Gaps = 24/509 (5%) Strand=Plus/Minus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| || | ||||||||| |||| | |||| |||||||||||| | |||||||||| Sbjct 378052 AGCACGGGATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGA 377993 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 | |||||||||| |||| |||||| | |||| |||||| ||| ||| ||||| | Sbjct 377992 TTCTGGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCC 377933 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092 | ||||||| || || ||||||| || ||||| | || | || | Sbjct 377932 TGGCGGGCGAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGATCTCGTCGACATGGGTC 377873 Query 263093 TGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTG 263152 ||||| | || | | | || ||||||| | | |||||| | ||| | | Sbjct 377872 TGTGGTCAGACGCCATGAAGAATCGCATCATTGCCGAGAACGGCTCGATCCAGAACATCC 377813 Query 263153 ACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGG-AGGTGCCC 263211 | || | || ||| | |||||||| | |||||| || |||| | | | | Sbjct 377812 CCAAC------ATTCCCGGCGAGGTAAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGC 377759 Query 263212 AAC--CGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGT 263269 | | | ||| | | ||||| |||||||||| ||| | |||||||| ||||| Sbjct 377758 AGCGTCATGTG---GTGCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGT 377702 Query 263270 CGCTCAACCTGTACCTCGCCGACCCGAC---GGCCGAGAGCATCACGTCGATGCAC---G 263323 | |||||| | || | ||||| || || | || ||||||||||||||| | Sbjct 377701 CTCTCAACATTCACATGAAGGACCCAACCATGGGCAAG---ATCACGTCGATGCACTTTG 377645 Query 263324 CCTATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTG 263383 || | |||| | || |||||||||||||||||||| ||||||| | |||| | Sbjct 377644 CC---GGGTGGAAGCTGGGTCTCAAGACTGGCATGTACTACTTGCGCACGCAAGCCGCCG 377588 Query 263384 CCAACGCCATTCAATTCACCGTCGATCAG 263412 | | |||| || |||||||| || ||| Sbjct 377587 CGGCCCCCATCCAGTTCACCGTTGACCAG 377559 >seq36 Length=277325 Score = 107 bits (118), Expect = 3e-17 Identities = 175/247 (71%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 1600501 GTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCAC 1600560 ||| || || ||| || |||||||||| | |||||| | |||||| | || ||| Sbjct 33346 GTCAACTGTCACGTCGGTAAAGGGCGTGGCATCGCCCTCCATGCCCTCCAGCGTGGACAC 33405 Query 1600561 CTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGG 1600620 ||||| || ||| ||| |||| | | | || ||||| |||||||| ||||||||||| Sbjct 33406 CTTGCTTAGCAGGCACTCGATCAAGTGGGCAATTGTCATTCGCGACGGAATGGCGTGCGG 33465 Query 1600621 GTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTC--GGTG 1600678 |||||| | ||||| |||||| | || | | | | ||||||||||||| | | Sbjct 33466 GTTGATGATGATGTCTGGCGTGACCCCTTCCC---GTGTAAAGGGCATGTCCTCCTGCCG 33522 Query 1600679 GAGCG-CACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCAC 1600737 | || ||| || | ||||||||||| ||||| || |||| | |||||||| | Sbjct 33523 GTACGTCAC---ACCAATCGTGCCCTTTTGTCCGTGACGAGACGCAAACTTGTCGCCAAT 33579 Query 1600738 CT-CGGG 1600743 || |||| Sbjct 33580 CTGCGGG 33586 >seq32 Length=314566 Score = 105 bits (116), Expect = 1e-16 Identities = 125/161 (78%), Gaps = 15/161 (9%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAA---CAAGGAGGGCCTCGACACTTTGCCG 1456179 ||||||||||||||||| || |||||| | ||||||| || | ||| ||| Sbjct 225459 AAAAAGGCCGACTGGGCCATCCGCTGGATCCAAGACAAGGAGT--CTAG---CTTCGCCC 225405 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCG- 1456235 | || | || | ||| ||||| |||||||||||||| ||| | | ||| ||| ||| Sbjct 225404 AACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCA--TTC-GCGT 225348 Query 1456236 CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 ||||||||||||||||||||||||||||||||||||| ||| Sbjct 225347 CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTT 225307 Score = 95.1 bits (104), Expect = 2e-13 Identities = 185/267 (69%), Gaps = 5/267 (2%) Strand=Plus/Minus Query 1456515 CCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGC 1456574 ||||| | |||||| ||| |||||| || ||| |||| || | | ||| | |||| Sbjct 225205 CCAAGAA-ATCATCACCGATGCCGTCACCATTGAGCAAGATTTCCTGACGGAGGCTCTGC 225147 Query 1456575 CGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGC 1456634 || || || ||||||||||| ||| | || ||| || ||||| ||| || || || Sbjct 225146 CGTGCGCTCTTCTCGGCATGAACTCCA-CACTGATGAAGCAATACATCGAA-TTCGTTGC 225089 Query 1456635 CGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCC 1456694 |||||||||| | | || ||||| || ||| ||| ||| || || ||||| Sbjct 225088 CGACCGCCTGTTGGTTGCTCTCGG-GAATGAAAAGGTGTACAAGACAGCGAATCCGTTTG 225030 Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCG 1456753 | |||||| ||||| || | ||||||||||||||||| ||| || | ||| | Sbjct 225029 ATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTTTTTGAGAAGCGAGTTGGTG 224970 Query 1456754 AGTACGCCAAGGCCGGCGTCACCGCCA 1456780 | ||| |||||||| |||| |||| Sbjct 224969 AATACCAGAAGGCCGGTGTCATGGCCA 224943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177797793194518