Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq6 141 1e-27
seq1 134 2e-25
seq36 107 3e-17
seq32 105 1e-16
>seq6
Length=1035304
Score = 141 bits (156), Expect = 1e-27
Identities = 269/384 (70%), Gaps = 24/384 (6%)
Strand=Plus/Minus
Query 1816027 CTCAATGTAGGTGGCGTCGGCGCCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTT 1816086
||| ||| | ||||||| |||||| |||| || ||||||||||||||||||
Sbjct 761762 CTCGATGCACATGGCGTCCAGGCCGTCCTCGCCGTAGAGGAACTGGACAATGTCGCCGAG 761703
Query 1816087 GGCGTTGCGCACGAGGCCGCCG---CGCTTGATCTGCAGGCTCTCCATCGACTTGATGCA 1816143
| ||||||||| ||| || ||| | || ||| ||| | || |||||
Sbjct 761702 CGAGTTGCGCACCGTCCCGTCGTACCGCGCGCTC---AGGTCCTCGAGCGCCTTGACCAG 761646
Query 1816144 CCGGCGCTGGATGTAGCCACGTC-CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGC 1816202
||| |||||||||||||| |||| |||| ||||||||||||||||||| ||||||||||
Sbjct 761645 CCGCCGCTGGATGTAGCC-CGTCTCGGCCGTCTTGACGGCCGTGTCGATGAGGCCCTCGC 761587
Query 1816203 GGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGC 1816262
| ||| | || ||| || || | |||| || | ||||||||| |||||||||
Sbjct 761586 GACCGGCCATGGCGTGGAAGAAGAACTCGGTCGGCGTCAGGCCGCGCAGGTACGAGTTCT 761527
Query 1816263 GCACAAAGCCGCGGCTCTCGGGCGGCGGCACGGCCTCGG---CGTGCCGGTAGCAGCCCA 1816319
|| ||||||||| |||||||| || ||| || ||| ||| ||| | ||
Sbjct 761526 CGACGAAGCCGCGGGCCTCGGGCGAGTAGTCGTCCTTGGTGAAGTG-CGGCAGC-GTCCG 761469
Query 1816320 GTGTGCGCGAACCCGACTCGGAGTGGATGCGCTGGCCCTCATTGCTCTGCTGGCCCACGC 1816379
|| | ||| || | || ||||||||| |||||| |||||||||| || |
Sbjct 761468 GTAT--TTGAAGCCAA-----AGGGGATGCGCTTGCCCTCGACAATCTGCTGGCCGAC-C 761417
Query 1816380 A--GCCGCACATCTGGGTGATGTT 1816401
| |||| |||||||| ||||||
Sbjct 761416 AGGGCCG-TCATCTGGGAGATGTT 761394
Score = 122 bits (134), Expect = 1e-21
Identities = 253/374 (68%), Gaps = 6/374 (2%)
Strand=Plus/Minus
Query 1812944 ACGTCCGAGATGGCCGTGCCGATGGGCGCCGCCTGGCCCAGGATGATGGGCTCCGTGACC 1813003
||||| || || | ||||| ||||||||| ||||||||| |||| | |||| ||
Sbjct 763477 ACGTCAAAGTTGCCGGTGCCCATGGGCGCCAGCTGGCCCAGCATGACGTTTTCCGAGAT- 763419
Query 1813004 GAGCCGTCGGTGATCTTGTCGGTCTCGGCAAAGGCCGCCGCGTCAAAGAGGATGTCGACA 1813063
|||| ||| || ||| ||| | |||||| || || | |||||| |||||
Sbjct 763418 --GCCG-CGGCAGTC--GTCAAGCTCCCCGGTGGCCGCGGCCTCGAGGAGGATCTCGACC 763364
Query 1813064 GTCTCCTCAAAAGAGGCGCGCGACAGAAAACCGTGGTCGGCGCGGTTAAAGCCGTGCCGC 1813123
|||||||| || ||| |||| ||| || |||||||||||| | |||||||||
Sbjct 763363 GTCTCCTCGAAGGAGCAGCGCATCAGGGCCCCCGTGTCGGCGCGGTTGATGCCGTGCCGG 763304
Query 1813124 GTGACGGCCACCACTGAGCCGCGGCAACACATGGTGTCGGTGGCCAGCGCAAAGTGGCGG 1813183
||||||||| | ||| ||| | |||| |||| | ||| || | |||||||
Sbjct 763303 GTGACGGCCGAGATGCTGCCCCGGTACGTCATGACGTCGACGAGCAGGGCGATGTGGCGG 763244
Query 1813184 TCGTTGACATAGGTGCCGTCAAAGGAGATCACGGCCTTGATCTCGGAAAAGAGCACGGCC 1813243
| |||||| |||| ||||||||||| | |||| | | ||| | ||| ||| |
Sbjct 763243 TGGTTGACGTAGGAGCCGTCAAAGGCCAGCACGTTGGTCAGCTCCTTGACCAGCGCGGAC 763184
Query 1813244 ACGGCAGCCTCTATGCCCAGCACGGCCGCCACGCGGTTGATGTCGTTGGTGTGGCTGCGC 1813303
|| ||||| ||||| | || | | | | || ||||||||||| | ||||
Sbjct 763183 CGCGCGGCCTCGATGCCAAAGACCTCGACAATCTGCCAGAGGTCGTTGGTGTAGGTGCGG 763124
Query 1813304 GAGGCATCCACGCC 1813317
| || ||||||||
Sbjct 763123 GTGGGGTCCACGCC 763110
>seq1
Length=1559860
Score = 134 bits (148), Expect = 2e-25
Identities = 334/503 (66%), Gaps = 17/503 (3%)
Strand=Plus/Minus
Query 259680 AGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACT 259739
||||||| |||| |||||| ||||||| ||| ||||||| ||| |||||
Sbjct 379447 AGCACAAAGAGGAGCTCGACTCTGCCATTGTTTACGAGAGAGACTTCAACTATCAGTACT 379388
Query 259740 TTGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGC 259799
||||| | ||| || || || || || || || || | | ||||| |
Sbjct 379387 TTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGAAGCTGGACGGCAAGATTGTCGAAC 379328
Query 259800 GGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACA 259859
| || ||| | ||| |||||||||| || | ||| | |||| || ||||
Sbjct 379327 GACCTCAGCACATGATCATGCGTGTTGCTGTCGGCA--TCTGGG------GA----GACA 379280
Query 259860 ATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCTCA 259918
| | |||| ||| || | |||||| | |||||| ||| | || ||||||
Sbjct 379279 ACA---TTGAGCGCGTCCTGGAAACCTACAACCTCATGTC-CAGTAAATTCTTCACCCAC 379224
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
|| | || || ||||| || || |||||||| | ||| ||| |||||||| ||
Sbjct 379223 GCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTC 379164
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| |||||||||| || |||||||||||||| ||||| |||||| ||||| |
Sbjct 379163 GTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATG 379104
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
|| || || ||||||||| ||||| | || ||| | || || | || ||
Sbjct 379103 ATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCC 379044
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
||| | || |||||||||||| || |||||| | || |||||||| || || || |||
Sbjct 379043 TACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAAC 378984
Query 260159 GACACGGCGCGCTACGTCGACCA 260181
|||| || | |||||||||||
Sbjct 378983 AACACTGCCAGATACGTCGACCA 378961
Score = 129 bits (142), Expect = 8e-24
Identities = 337/509 (66%), Gaps = 24/509 (5%)
Strand=Plus/Minus
Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972
|||| || | ||||||||| |||| | |||| |||||||||||| | ||||||||||
Sbjct 378052 AGCACGGGATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGA 377993
Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032
| |||||||||| |||| |||||| | |||| |||||| ||| ||| ||||| |
Sbjct 377992 TTCTGGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCC 377933
Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092
| ||||||| || || ||||||| || ||||| | || | || |
Sbjct 377932 TGGCGGGCGAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGATCTCGTCGACATGGGTC 377873
Query 263093 TGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTG 263152
||||| | || | | | || ||||||| | | |||||| | ||| | |
Sbjct 377872 TGTGGTCAGACGCCATGAAGAATCGCATCATTGCCGAGAACGGCTCGATCCAGAACATCC 377813
Query 263153 ACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGG-AGGTGCCC 263211
| || | || ||| | |||||||| | |||||| || |||| | | | |
Sbjct 377812 CCAAC------ATTCCCGGCGAGGTAAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGC 377759
Query 263212 AAC--CGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGT 263269
| | | ||| | | ||||| |||||||||| ||| | |||||||| |||||
Sbjct 377758 AGCGTCATGTG---GTGCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGT 377702
Query 263270 CGCTCAACCTGTACCTCGCCGACCCGAC---GGCCGAGAGCATCACGTCGATGCAC---G 263323
| |||||| | || | ||||| || || | || ||||||||||||||| |
Sbjct 377701 CTCTCAACATTCACATGAAGGACCCAACCATGGGCAAG---ATCACGTCGATGCACTTTG 377645
Query 263324 CCTATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTG 263383
|| | |||| | || |||||||||||||||||||| ||||||| | |||| |
Sbjct 377644 CC---GGGTGGAAGCTGGGTCTCAAGACTGGCATGTACTACTTGCGCACGCAAGCCGCCG 377588
Query 263384 CCAACGCCATTCAATTCACCGTCGATCAG 263412
| | |||| || |||||||| || |||
Sbjct 377587 CGGCCCCCATCCAGTTCACCGTTGACCAG 377559
>seq36
Length=277325
Score = 107 bits (118), Expect = 3e-17
Identities = 175/247 (71%), Gaps = 10/247 (4%)
Strand=Plus/Plus
Query 1600501 GTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCAC 1600560
||| || || ||| || |||||||||| | |||||| | |||||| | || |||
Sbjct 33346 GTCAACTGTCACGTCGGTAAAGGGCGTGGCATCGCCCTCCATGCCCTCCAGCGTGGACAC 33405
Query 1600561 CTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGG 1600620
||||| || ||| ||| |||| | | | || ||||| |||||||| |||||||||||
Sbjct 33406 CTTGCTTAGCAGGCACTCGATCAAGTGGGCAATTGTCATTCGCGACGGAATGGCGTGCGG 33465
Query 1600621 GTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTC--GGTG 1600678
|||||| | ||||| |||||| | || | | | | ||||||||||||| | |
Sbjct 33466 GTTGATGATGATGTCTGGCGTGACCCCTTCCC---GTGTAAAGGGCATGTCCTCCTGCCG 33522
Query 1600679 GAGCG-CACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCAC 1600737
| || ||| || | ||||||||||| ||||| || |||| | |||||||| |
Sbjct 33523 GTACGTCAC---ACCAATCGTGCCCTTTTGTCCGTGACGAGACGCAAACTTGTCGCCAAT 33579
Query 1600738 CT-CGGG 1600743
|| ||||
Sbjct 33580 CTGCGGG 33586
>seq32
Length=314566
Score = 105 bits (116), Expect = 1e-16
Identities = 125/161 (78%), Gaps = 15/161 (9%)
Strand=Plus/Minus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAA---CAAGGAGGGCCTCGACACTTTGCCG 1456179
||||||||||||||||| || |||||| | ||||||| || | ||| |||
Sbjct 225459 AAAAAGGCCGACTGGGCCATCCGCTGGATCCAAGACAAGGAGT--CTAG---CTTCGCCC 225405
Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCG- 1456235
| || | || | ||| ||||| |||||||||||||| ||| | | ||| ||| |||
Sbjct 225404 AACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCA--TTC-GCGT 225348
Query 1456236 CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276
||||||||||||||||||||||||||||||||||||| |||
Sbjct 225347 CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTT 225307
Score = 95.1 bits (104), Expect = 2e-13
Identities = 185/267 (69%), Gaps = 5/267 (2%)
Strand=Plus/Minus
Query 1456515 CCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGC 1456574
||||| | |||||| ||| |||||| || ||| |||| || | | ||| | ||||
Sbjct 225205 CCAAGAA-ATCATCACCGATGCCGTCACCATTGAGCAAGATTTCCTGACGGAGGCTCTGC 225147
Query 1456575 CGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGC 1456634
|| || || ||||||||||| ||| | || ||| || ||||| ||| || || ||
Sbjct 225146 CGTGCGCTCTTCTCGGCATGAACTCCA-CACTGATGAAGCAATACATCGAA-TTCGTTGC 225089
Query 1456635 CGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCC 1456694
|||||||||| | | || ||||| || ||| ||| ||| || || |||||
Sbjct 225088 CGACCGCCTGTTGGTTGCTCTCGG-GAATGAAAAGGTGTACAAGACAGCGAATCCGTTTG 225030
Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCG 1456753
| |||||| ||||| || | ||||||||||||||||| ||| || | ||| |
Sbjct 225029 ATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTTTTTGAGAAGCGAGTTGGTG 224970
Query 1456754 AGTACGCCAAGGCCGGCGTCACCGCCA 1456780
| ||| |||||||| |||| ||||
Sbjct 224969 AATACCAGAAGGCCGGTGTCATGGCCA 224943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177797793194518
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