Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq25 141 8e-29 seq31 134 1e-26 seq3 125 6e-24 seq45 86.0 6e-12 >seq25 Length=408197 Score = 141 bits (156), Expect = 8e-29 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| ||||||||||| ||||||| |||||| | || ||||||||||| || ||||| | Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | ||| | || |||||||||| |||||| ||| | | | Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 312530 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||||| || || ||||| | |||||| || || ||||||| || ||||||| Sbjct 312531 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 312590 Query 35727 A 35727 | Sbjct 312591 A 312591 >seq31 Length=345369 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || ||||| |||||||||||||||||| ||||| Sbjct 218533 CCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCT 218474 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | | || || ||||||||||| ||||| || | |||||||| || | |||| Sbjct 218473 AGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGA 218414 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || |||||||| | ||| ||| | ||||| | | | | || || ||| ||||| Sbjct 218413 ATGCCCTCCTTGT-CTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCAC 218355 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||| || || || |||| || || || || |||||||| Sbjct 218354 CTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||||||| ||||| |||| || |||||||| || ||||| Sbjct 218270 CTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAA 218211 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | |||||||| ||||| ||| | || Sbjct 218210 GATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCTTGAATCTTCGACTTGA-CGT 218152 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||| || || |||| |||||| ||||| ||||||| || || | Sbjct 218151 TGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGA 218092 Query 35724 CAAATATCTGCAT 35736 |||| || ||||| Sbjct 218091 CAAAGATTTGCAT 218079 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||||||| ||| || | || || ||||| ||||| ||||| Sbjct 217813 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAG 217754 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 ||||| ||||||||||| | || | || |||||||| | ||| ||| | ||| | | | Sbjct 217753 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGT-CTTGAATTTTCGACTTGACATT 217695 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || |||||||| | ||||| || || || || | || || || Sbjct 217694 GTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTAC 217635 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 217634 GAAGATTTGCAT 217623 >seq3 Length=1259731 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || |||||| || | || |||||||| || |||||||| |||||| Sbjct 602966 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 603025 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || ||||| || | ||||||||||| | || Sbjct 603026 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 603085 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | |||||| || |||||| Sbjct 603086 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 603145 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || || || || |||||||| Sbjct 603146 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192 >seq45 Length=238474 Score = 86.0 bits (94), Expect = 6e-12 Identities = 170/248 (69%), Gaps = 14/248 (6%) Strand=Plus/Minus Query 41110 CCAAAACCACCACCTCCGCGTTCCGTCACGTCCAA------CGACTCGACCAGCTTTGGC 41163 ||||||||||| ||||||| ||||| | ||||| | |||||| | || | Sbjct 75285 CCAAAACCACCTGCTCCGCGCACCGTCTCCTCCAACTCCTGCACCTCGACAACCT----C 75230 Query 41164 GTGGCAATGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACA 41223 | || ||| |||||| || | ||| ||||| || || ||||| |||| | | ||| || Sbjct 75229 GGGG--GTGTAGATGCGTTCAATGATGAGCTGGGCCACGCGATCGCCCTCCTTGACCTCA 75172 Query 41224 AAGTCCACGTCGTTGTTGTTCACCATCACTATGCCCACGTTGCCCG-TGTAGTCGGGATC 41282 ||||| ||| || ||| | || || || || ||||||| ||| || | || Sbjct 75171 AAGTCGGTCTCGGCGTGGTTGAACAGCAAAATCTTTAC-TTGCCCGCGGTAATCAGCGTC 75113 Query 41283 GATGACGCCAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGAT 41342 |||||||| ||| | ||||||| |||||| | || |||||||| ||||| || || Sbjct 75112 AATGACGCCGGCACCTGTGTCGATGAAGTGCTTGGATGCAAGCCCCGAGCGGGGGGCAAT 75053 Query 41343 CCTACCGT 41350 | |||| Sbjct 75052 GCGGCCGT 75045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792816746120