Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq25 141 8e-29
seq31 134 1e-26
seq3 125 6e-24
seq45 86.0 6e-12
>seq25
Length=408197
Score = 141 bits (156), Expect = 8e-29
Identities = 140/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| ||||||||||| ||||||| |||||| | || ||||||||||| || ||||| |
Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
|||| ||||||||||| | ||| | || |||||||||| |||||| ||| | | |
Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 312530
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||||| || || ||||| | |||||| || || ||||||| || |||||||
Sbjct 312531 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 312590
Query 35727 A 35727
|
Sbjct 312591 A 312591
>seq31
Length=345369
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || ||||| |||||||||||||||||| |||||
Sbjct 218533 CCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCT 218474
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||||| | | || || ||||||||||| ||||| || | |||||||| || | ||||
Sbjct 218473 AGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGA 218414
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| || |||||||| | ||| ||| | ||||| | | | | || || ||| |||||
Sbjct 218413 ATGCCCTCCTTGT-CTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCAC 218355
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||| | |||||| || || || |||| || || || || ||||||||
Sbjct 218354 CTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307
Score = 116 bits (128), Expect = 3e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||||||| ||||| |||| || |||||||| || |||||
Sbjct 218270 CTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAA 218211
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | |||| | |||||||| ||||| ||| | ||
Sbjct 218210 GATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCTTGAATCTTCGACTTGA-CGT 218152
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||| ||| || || |||| |||||| ||||| ||||||| || || |
Sbjct 218151 TGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGA 218092
Query 35724 CAAATATCTGCAT 35736
|||| || |||||
Sbjct 218091 CAAAGATTTGCAT 218079
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| ||||||| ||| || | || || ||||| ||||| |||||
Sbjct 217813 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAG 217754
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664
||||| ||||||||||| | || | || |||||||| | ||| ||| | ||| | | |
Sbjct 217753 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGT-CTTGAATTTTCGACTTGACATT 217695
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || |||||||| | ||||| || || || || | || || ||
Sbjct 217694 GTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTAC 217635
Query 35725 AAATATCTGCAT 35736
|| || |||||
Sbjct 217634 GAAGATTTGCAT 217623
>seq3
Length=1259731
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||| || | | || |||||| || | || |||||||| || |||||||| ||||||
Sbjct 602966 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 603025
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || || |||||||| || ||||| || | ||||||||||| | ||
Sbjct 603026 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 603085
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||| | | | | | |||||| || ||||||
Sbjct 603086 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 603145
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || ||||| | || || || || ||||||||
Sbjct 603146 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192
>seq45
Length=238474
Score = 86.0 bits (94), Expect = 6e-12
Identities = 170/248 (69%), Gaps = 14/248 (6%)
Strand=Plus/Minus
Query 41110 CCAAAACCACCACCTCCGCGTTCCGTCACGTCCAA------CGACTCGACCAGCTTTGGC 41163
||||||||||| ||||||| ||||| | ||||| | |||||| | || |
Sbjct 75285 CCAAAACCACCTGCTCCGCGCACCGTCTCCTCCAACTCCTGCACCTCGACAACCT----C 75230
Query 41164 GTGGCAATGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACA 41223
| || ||| |||||| || | ||| ||||| || || ||||| |||| | | ||| ||
Sbjct 75229 GGGG--GTGTAGATGCGTTCAATGATGAGCTGGGCCACGCGATCGCCCTCCTTGACCTCA 75172
Query 41224 AAGTCCACGTCGTTGTTGTTCACCATCACTATGCCCACGTTGCCCG-TGTAGTCGGGATC 41282
||||| ||| || ||| | || || || || ||||||| ||| || | ||
Sbjct 75171 AAGTCGGTCTCGGCGTGGTTGAACAGCAAAATCTTTAC-TTGCCCGCGGTAATCAGCGTC 75113
Query 41283 GATGACGCCAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGAT 41342
|||||||| ||| | ||||||| |||||| | || |||||||| ||||| || ||
Sbjct 75112 AATGACGCCGGCACCTGTGTCGATGAAGTGCTTGGATGCAAGCCCCGAGCGGGGGGCAAT 75053
Query 41343 CCTACCGT 41350
| ||||
Sbjct 75052 GCGGCCGT 75045
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450792816746120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |