Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq31 161 1e-34 seq1 132 5e-26 seq3 131 2e-25 seq25 107 2e-18 >seq31 Length=345369 Score = 161 bits (178), Expect = 1e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || ||||||||||| || |||||||||||| | | |||| | || ||| Sbjct 217831 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 217772 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 |||||||| || ||||| ||||| |||||||| |||||||| ||||| || || |||||| Sbjct 217771 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 217712 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| ||||| ||| | ||||| || || ||||| ||||| || ||||| || Sbjct 217711 ATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 217652 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || ||||| |||||||| Sbjct 217651 CCGGTGAGGGTCTTTACGAAGATTTGCAT 217623 Score = 154 bits (170), Expect = 1e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||| || || ||||||||||| || |||||||||||| | | |||| | Sbjct 218068 AGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 218009 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| ||||| |||||||| ||||| ||||| || ||||| |||||||| ||||| || Sbjct 218008 CCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCC 217949 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| ||||| ||| | |||||||| || ||||| || || || Sbjct 217948 TTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTG 217889 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || ||||| || ||||| Sbjct 217888 ATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| ||||| || ||||| ||||| || |||||||||||| | Sbjct 218305 CCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 218246 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| ||||| ||||| || | |||||||| ||||| || Sbjct 218245 AATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGA 218186 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| || ||||| ||| | ||||| ||||| || || Sbjct 218185 ATCCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACT 218126 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || | || || || || |||||||| Sbjct 218125 TCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| | ||| || ||||||||||||||||||||| | | ||| Sbjct 218524 AGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTC 218465 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || ||||| || | ||||||||||| || || ||||| || Sbjct 218464 CCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCC 218405 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||||||||| || || || | || || ||||| ||||| ||||| || Sbjct 218404 TTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTG 218345 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || |||||||| ||||| Sbjct 218344 ATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307 >seq1 Length=1559860 Score = 132 bits (146), Expect = 5e-26 Identities = 669/1055 (63%), Gaps = 21/1055 (2%) Strand=Plus/Minus Query 7555 GAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGAC 7614 |||||| ||| |||||| | |||| || || || ||||| || || ||||||| Sbjct 379331 GAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAG 379272 Query 7615 GCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACC 7674 || | ||||||| ||| | | ||||| ||| || || ||||| || || ||| Sbjct 379271 CGCGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCTTCACCCACGCCTCACCTACC 379212 Query 7675 ATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGC 7734 | || ||||||||| | ||| | |||||||| || | | |||| Sbjct 379211 CTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCGTCGACATGAAG 379152 Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATA 7793 |||||||||||||| ||||| ||| |||| || | || |||||||| ||||| ||| Sbjct 379151 GAAGACAGCATCGAGGGCATCTACGACACTCT-CAAGACTTGCGCCATGATTTCTAAAAT 379093 Query 7794 CGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTC 7853 | |||||| || || |||||||| || | | || || | ||| | ||| | Sbjct 379092 GGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCCTACATTGCCGG 379033 Query 7854 CACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCG 7913 ||||||||| | | | ||| | | |||||| |||| || ||||| ||| | | | Sbjct 379032 CACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCAG 378973 Query 7914 ACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTG 7970 | | || ||||| || || ||||| |||||| |||||||| ||||||| || Sbjct 378972 ATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTG 378913 Query 7971 GCACGCGGACATTTACGCAGTGCTAAATCTGCG-TCGCAACATGGGTTG--CGAAGACAG 8027 |||||| || | | | | | || |||| | | | || || | |||| | | Sbjct 378912 GCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCG 378853 Query 8028 CAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCA 8087 | || ||||| || ||| | | ||||| | ||||| || || |||| ||| || | Sbjct 378852 C---GCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGA 378796 Query 8088 TTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTA 8147 | | | ||| | |||||||||||| | |||||| | || || Sbjct 378795 GAAGAATGGCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTA 378736 Query 8148 CGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCA 8207 ||| | ||||| ||||| || | ||||| | ||| ||| ||| || ||| Sbjct 378735 CGGCGACGAGTTTGAGGCTTTGTATGAAAAGTACGAGCGCGAAGGC-CGT---GGCCGCA 378680 Query 8208 AGTGAAAGCGCGC----GACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTA 8263 || || ||||| | ||| | | || |||| ||| | ||| || || | Sbjct 378679 AGACAATCCGCGCCCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCA 378620 Query 8264 TGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCA 8323 || | ||||||||||| || ||||||| || ||||| || | ||| |||| | Sbjct 378619 ACCCCTTTATGCTGTACAAGGATCATTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAA 378560 Query 8324 CCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGG 8383 ||||| | || ||| || ||| | || ||| | ||||| || |||||||| || | Sbjct 378559 CCATTCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTCGGCCCCCGACGAGGTTG 378500 Query 8384 CCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAA-ACACT 8442 |||| ||||| || || || | | ||| || || || | ||| ||| || Sbjct 378499 CCGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTTGTGGA-CTACGACCAAGGCAAG 378441 Query 8443 TACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAATTTAGATCGCATC 8502 |||||||| || | || | ||| | | ||| || || ||| | | ||| Sbjct 378440 TACGACTTCCAAAAGCTGCACGACGTCACCCGCGTGGTTGTCCGAAATCTCAACAAGATC 378381 Query 8503 ATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCC 8562 || || ||||| || ||| | ||||||| ||| |||||||| || | ||| Sbjct 378380 ATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCAACAGCAACATGCGGCATCGTCCC 378321 Query 8563 GTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTT 8597 |||| || || || ||||| |||||||||| || Sbjct 378320 ATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTT 378286 >seq3 Length=1259731 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||| ||||| || |||||||||||| | | |||| | Sbjct 602975 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 603034 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| || | |||||||| ||||| || ||||| || Sbjct 603035 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCC 603094 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| || ||||| ||||| || Sbjct 603095 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 603154 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | || || |||||||| ||||| ||| Sbjct 603155 ATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 603196 >seq25 Length=408197 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| ||||||||||||||| | | ||| | || || ||||| ||||| ||||| | Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||||||||||||| ||||| || ||||| || || || || || || ||||| || Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 312530 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || || || ||||| || ||||| || || || | || || || | Sbjct 312531 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 312590 Query 134704 AA 134705 || Sbjct 312591 AA 312592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397521870280