Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 4e-28
seq32 129 8e-25
>seq1
Length=1559860
Score = 140 bits (154), Expect = 4e-28
Identities = 442/682 (65%), Gaps = 10/682 (1%)
Strand=Plus/Plus
Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606
||||| ||||| || || ||||| | | ||| | ||| | || || || |||||
Sbjct 378751 CCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 378810
Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666
|| || ||||| ||||| || || | ||||| || | | | ||| || || ||
Sbjct 378811 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 378870
Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726
|| ||| | ||||| || || || | | ||| | ||||| || || || || ||
Sbjct 378871 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 378930
Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786
|| | | | |||||||| || || || || || || | ||||||||||||||| || ||
Sbjct 378931 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 378990
Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846
|||| |||||| |||| | || || || | || || || || | ||| || |||
Sbjct 378991 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 379050
Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906
| || ||||| | || || || || || ||||||||||| || | ||
Sbjct 379051 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 379110
Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966
||| || | ||||| || || ||||| ||||| || || |||||| | || ||
Sbjct 379111 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 379170
Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026
|| || | ||| || || ||||| || || | ||||| || ||||| |||
Sbjct 379171 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 379230
Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTC----AATAGCTGATTCTATATC-CCACT 70081
|| |||| || | || ||||| ||||| | ||| | | | | || || |
Sbjct 379231 AAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGT-TGTCTCCCCA 379289
Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141
|||| || | || |||||||| | ||| |||||||||||||| || | || |
Sbjct 379290 GATG----CCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGT 379345
Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGT 70201
| |||| || || ||| ||||| || || || ||||| || | || ||||
Sbjct 379346 CCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGT 379405
Query 70202 CTCTTTCGTAAATAATAACAGA 70223
|||| ||||||| ||| ||||
Sbjct 379406 CTCTCTCGTAAACAATGGCAGA 379427
>seq32
Length=314566
Score = 129 bits (142), Expect = 8e-25
Identities = 228/332 (69%), Gaps = 3/332 (1%)
Strand=Plus/Plus
Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898
||||| || ||||| ||||| |||| | | | || || | ||| || || ||
Sbjct 225542 GTTTCAATGGCATTGAAGAGGTAATTTCGCTGCGCGTGCTCCTTGATATACGTGTCGATC 225601
Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958
|| | | |||| | || |||||||| || || ||| ||||| || ||||| |||||
Sbjct 225602 AATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAA 225661
Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018
| ||||||| || || ||||| | || | || ||| ||||| || || ||
Sbjct 225662 CGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATG 225721
Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078
||||| || ||||| |||||||| | || ||| ||||| ||||||||| ||
Sbjct 225722 CCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATCGTCGTTC 225781
Query 40079 AAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAC 40135
| ||||||||||| | | ||| || || | |||| ||||| |||||||| ||
Sbjct 225782 AGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAAA 225841
Query 40136 GACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167
|| ||||| ||||| |||||||| | ||||||
Sbjct 225842 GAAGCCTCAGCCTTCTTGTACATTTGCCATAT 225873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686907606495960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |