Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 140 4e-28 seq32 129 8e-25 >seq1 Length=1559860 Score = 140 bits (154), Expect = 4e-28 Identities = 442/682 (65%), Gaps = 10/682 (1%) Strand=Plus/Plus Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 ||||| ||||| || || ||||| | | ||| | ||| | || || || ||||| Sbjct 378751 CCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 378810 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 || || ||||| ||||| || || | ||||| || | | | ||| || || || Sbjct 378811 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 378870 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || ||| | ||||| || || || | | ||| | ||||| || || || || || Sbjct 378871 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 378930 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | | |||||||| || || || || || || | ||||||||||||||| || || Sbjct 378931 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 378990 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 |||| |||||| |||| | || || || | || || || || | ||| || ||| Sbjct 378991 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 379050 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | || ||||| | || || || || || ||||||||||| || | || Sbjct 379051 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 379110 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 ||| || | ||||| || || ||||| ||||| || || |||||| | || || Sbjct 379111 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 379170 Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026 || || | ||| || || ||||| || || | ||||| || ||||| ||| Sbjct 379171 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 379230 Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTC----AATAGCTGATTCTATATC-CCACT 70081 || |||| || | || ||||| ||||| | ||| | | | | || || | Sbjct 379231 AAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGT-TGTCTCCCCA 379289 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 |||| || | || |||||||| | ||| |||||||||||||| || | || | Sbjct 379290 GATG----CCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGT 379345 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGT 70201 | |||| || || ||| ||||| || || || ||||| || | || |||| Sbjct 379346 CCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGT 379405 Query 70202 CTCTTTCGTAAATAATAACAGA 70223 |||| ||||||| ||| |||| Sbjct 379406 CTCTCTCGTAAACAATGGCAGA 379427 >seq32 Length=314566 Score = 129 bits (142), Expect = 8e-25 Identities = 228/332 (69%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 ||||| || ||||| ||||| |||| | | | || || | ||| || || || Sbjct 225542 GTTTCAATGGCATTGAAGAGGTAATTTCGCTGCGCGTGCTCCTTGATATACGTGTCGATC 225601 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 || | | |||| | || |||||||| || || ||| ||||| || ||||| ||||| Sbjct 225602 AATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAA 225661 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 | ||||||| || || ||||| | || | || ||| ||||| || || || Sbjct 225662 CGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATG 225721 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078 ||||| || ||||| |||||||| | || ||| ||||| ||||||||| || Sbjct 225722 CCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATCGTCGTTC 225781 Query 40079 AAT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAC 40135 | ||||||||||| | | ||| || || | |||| ||||| |||||||| || Sbjct 225782 AGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAAA 225841 Query 40136 GACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 || ||||| ||||| |||||||| | |||||| Sbjct 225842 GAAGCCTCAGCCTTCTTGTACATTTGCCATAT 225873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907606495960