Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 6e-18
>seq1
Length=1559860
Score = 107 bits (118), Expect = 6e-18
Identities = 250/369 (68%), Gaps = 20/369 (5%)
Strand=Plus/Minus
Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040
|| ||| | || || ||||||||| || | |||||||| ||||| ||| ||| ||
Sbjct 379004 CCCATGCTGCGAGTCTTCAACAACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGA 378945
Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTTTTTA 255097
|| || || ||| |||||||||||||||| ||||||||||| | ||||| ||
Sbjct 378944 CCGGGCGCCTTCGCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAA-----TTCC 378890
Query 255098 CTGCTGTCCGACAAGAC--CGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155
|| | || || | || ||||| ||||| | ||| |||||| ||| | ||
Sbjct 378889 TTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGCGACCTCTTCCTTGCGC 378830
Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA--GAC--CTGGAGCCTC 255211
| ||| | ||| || || || || ||||| ||||| || | | ||||| ||||
Sbjct 378829 TGTGGATCCCCGACCTCTTCAT--GAAGCGTG--TCGAGAAGAATGGCGACTGGACCCTC 378774
Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTG 255271
||||| |||||| || || || || | ||||| | || ||||||||||| ||
Sbjct 378773 ATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTG 378714
Query 255272 TATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGATCTG 255330
||| |||||||||| | ||||| | || | | ||| | | ||| ||||| | ||
Sbjct 378713 TATGAAAAGTACGAGCGCGAAGGCCGTGGCCGCAAGACAA-TCCGCGCCCAGAAGCTGTG 378655
Query 255331 GAACACGAT 255339
| || ||||
Sbjct 378654 GTACTCGAT 378646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588333171272855
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |