Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1 107 6e-18 >seq1 Length=1559860 Score = 107 bits (118), Expect = 6e-18 Identities = 250/369 (68%), Gaps = 20/369 (5%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || || ||||||||| || | |||||||| ||||| ||| ||| || Sbjct 379004 CCCATGCTGCGAGTCTTCAACAACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGA 378945 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTTTTTA 255097 || || || ||| |||||||||||||||| ||||||||||| | ||||| || Sbjct 378944 CCGGGCGCCTTCGCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAA-----TTCC 378890 Query 255098 CTGCTGTCCGACAAGAC--CGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155 || | || || | || ||||| ||||| | ||| |||||| ||| | || Sbjct 378889 TTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGCGACCTCTTCCTTGCGC 378830 Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA--GAC--CTGGAGCCTC 255211 | ||| | ||| || || || || ||||| ||||| || | | ||||| |||| Sbjct 378829 TGTGGATCCCCGACCTCTTCAT--GAAGCGTG--TCGAGAAGAATGGCGACTGGACCCTC 378774 Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTG 255271 ||||| |||||| || || || || | ||||| | || ||||||||||| || Sbjct 378773 ATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTG 378714 Query 255272 TATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGATCTG 255330 ||| |||||||||| | ||||| | || | | ||| | | ||| ||||| | || Sbjct 378713 TATGAAAAGTACGAGCGCGAAGGCCGTGGCCGCAAGACAA-TCCGCGCCCAGAAGCTGTG 378655 Query 255331 GAACACGAT 255339 | || |||| Sbjct 378654 GTACTCGAT 378646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588333171272855