Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 >seq1 Length=1559860 Score = 174 bits (192), Expect = 2e-38 Identities = 1131/1798 (63%), Gaps = 31/1798 (2%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || |||||||| || | ||||| || | ||||| || | || |||| Sbjct 377608 TAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTG 377667 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATA--CTTTGACTTTGGTCAATGAAGCGCC 110486 ||| ||||| | |||| | ||| | | || |||| |||| || ||| | Sbjct 377668 CCCATGGTTGGGTCCTTCATGTGAATGTTGAGAGACTGGGACT--GGTCGATAAAGGCAC 377725 Query 110487 CCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGA 110546 | || | || ||||| | | |||| | | ||||||||| || || || | Sbjct 377726 CGCGGTCGGCGGCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACA 377785 Query 110547 GATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA 110606 || ||| | || | || || | | ||| |||||||| || || | | | | Sbjct 377786 GAGCCTTTACCTCGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGA 377845 Query 110607 TGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCT 110666 || ||| |||||| | | ||||| ||||| || | ||| || |||| || Sbjct 377846 TGCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATG 377905 Query 110667 TGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATG 110726 |||||| | ||||| || || ||| | || | |||| ||||| | ||||| | Sbjct 377906 GGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGG 377965 Query 110727 GTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCA 110786 | || ||||| || || || |||| || || | ||||| || || ||||| || || | Sbjct 377966 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGA 378025 Query 110787 TCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846 || || ||| |||| || | ||||||||| | |||||||| |||||| || Sbjct 378026 GCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCC 378085 Query 110847 A---GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGG 110903 | || | | || |||| |||| ||||||||||||| || | |||| || || | Sbjct 378086 ACAAGTCGGAC--GGCGTCACGTTCC-ACATGTCAAACTGCAGGATGCCTTCAGAGGCCG 378142 Query 110904 GAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA-ATTCACAGCTCGCCTCC 110962 |||| |||| || || |||| ||| | | | |||| | ||| | |||| | Sbjct 378143 GAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCG-ACGCCGTC 378201 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 | || ||||| || ||||| ||||| || | |||| ||| || || || Sbjct 378202 AAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGAC 378261 Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 ||||| | ||| | || || | || || | ||||||||||| | |||||| Sbjct 378262 TCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATG 378321 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142 || | || ||||| || || || || | ||||| || || ||| ||| Sbjct 378322 GGACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGATG 378381 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 111202 | ||| |||||| | ||| | |||| || || || |||| | || | Sbjct 378382 ATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTAC 378441 Query 111203 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 111262 ||| || | | ||| | || ||||| | || || | ||||| || || Sbjct 378442 TTGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCA 378501 Query 111263 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTC 111322 ||| || | | |||||| | ||| || || || | |||||| || ||| || Sbjct 378502 ACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTT 378561 Query 111323 CCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 111382 ||||| ||||| ||||| |||||| ||||||| ||||||||| ||||| |||| | Sbjct 378562 CCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTG 378621 Query 111383 CCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATC-GGCGGCTGGTACAATGG 111440 || ||||| ||||| | | ||| || | | ||| | | || || || | | | | Sbjct 378622 CCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTGTCTTG 378681 Query 111441 CGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG 111500 || | | || || || |||||||||| || | || |||||||| || || Sbjct 378682 CG--GCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGC 378739 Query 111501 CGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCA 111559 ||||| ||| || || || || || || || | || | ||| | ||| | ||| Sbjct 378740 AGTCGGCGAGCCCAGG-GCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCG 378798 Query 111560 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCC 111619 || ||||||||||| ||||| || |||||||| | ||||| || | | || | Sbjct 378799 ACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACT 378858 Query 111620 TCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGC 111679 || || | || ||||| || | |||||||| || | || ||| |||||||| ||| Sbjct 378859 TCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGC 378918 Query 111680 TCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCT 111736 || || |||| |||| | ||| ||| || |||| | || || | || Sbjct 378919 TCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCA 378978 Query 111737 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 111796 ||| ||| || || || ||||| |||| | || | || || || || || | Sbjct 378979 GTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCA 379038 Query 111797 ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTT 111856 || ||| | || | | |||| || || || ||||| || ||| || Sbjct 379039 ATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTA 379098 Query 111857 GAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGT 111914 || || | ||||| | | | | ||||| | ||||| || | ||| ||| ||||| Sbjct 379099 GAAATCATGGCGCA-AGT-CTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCA 379156 Query 111915 TGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTG 111974 || ||| |||||||| ||| | ||| || || || || ||||||||||| | Sbjct 379157 TGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAG 379216 Query 111975 GTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATC 112032 ||| ||||| |||| | | || |||||| || ||| || |||| ||| || Sbjct 379217 GTGAGGCGTGGGTGAAGAATTTACT--GGACATGAGGTTGTAGGTTTCCAGGACGCGCTC 379274 Query 112033 AATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCAT 112092 ||||| || || |||||||| || || ||||||| ||||| ||| || ||| | Sbjct 379275 AATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGAC 379334 Query 112093 GAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | |||| || ||| | ||||| | || ||| || || |||| ||||||||| Sbjct 379335 AATCTTGCCGTCCAGCTTCAGGAGATACGATC-GCTCCAGCGTCTTGAAACCAAAGTA 379391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030908794400