Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 239 6e-58 seq32 95.1 1e-14 >seq1 Length=1559860 Score = 239 bits (264), Expect = 6e-58 Identities = 1165/1841 (63%), Gaps = 27/1841 (1%) Strand=Plus/Plus Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857 |||| | ||||||| ||||| ||| ||| | | || | ||||||||| || ||| Sbjct 377563 TCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTC 377622 Query 117858 TTGAGCCCCTGCTTCCA---GGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGA 117914 ||||| ||| ||||||| |||| | ||||| || | | |||| | |||||| Sbjct 377623 TTGAGACCCAGCTTCCACCCGGCAAAG---TGCATCGACGTGATCTTGCCCATGGTTGGG 377679 Query 117915 CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCC 117974 | |||| | ||| | | ||||| || ||||| ||| || || || || ||| Sbjct 377680 TCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCC 377739 Query 117975 ATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCA 118034 || | | ||||| | | |||||||| || ||| |||| || ||| | || Sbjct 377740 ATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCTCG 377799 Query 118035 TCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATA 118094 | || || | ||| || ||||| || || | | | ||| ||| |||||| Sbjct 377800 CCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATTCTTCATG 377859 Query 118095 TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAA 118152 | | |||||| ||||| || | |||||||| | || ||| | |||| || Sbjct 377860 GCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGT--TGACGACCT 377917 Query 118153 CAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACT 118212 ||||| ||||| ||| ||||| | | || || |||| |||||| ||||| ||||||| Sbjct 377918 GGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCACT 377977 Query 118213 CATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGT 118272 | ||||| |||| || || | ||||| || ||||||||||| || | || || || Sbjct 377978 CGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAGT 378037 Query 118273 TACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTC---GTAGTTGAGCT 118329 | || | || | ||| | || | |||||||| | ||||| || ||| | | Sbjct 378038 TGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCACAAGTCGGAC- 378096 Query 118330 TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 118389 | | | | | |||||| |||||||| ||||| |||| || || || ||||||| | Sbjct 378097 --GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGATCCCTTGA 378154 Query 118390 ATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 118449 | || || || ||||| ||| |||| || |||| | ||| ||||| | Sbjct 378155 ACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAGGCGGCGTGGT 378214 Query 118450 ACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTC 118509 | || || |||||||| | |||| | |||||| || ||||| | | | Sbjct 378215 AGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCATGC 378274 Query 118510 GGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 118569 | | || || | || || | ||||| ||||||| ||||| || ||||| | || Sbjct 378275 GAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGGACGATGCCGCA 378334 Query 118570 TATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 118629 | || || || || | ||||| || || ||||| | | | || |||| Sbjct 378335 TGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGATGATCTTGTTGAGAT 378394 Query 118630 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 118689 || | || || |||| || || ||||||| | | || | ||| || | Sbjct 378395 TTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACTTGCCTTGGTCGT 378454 Query 118690 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 118749 | ||| | || ||||| | || || || || || || | ||| || Sbjct 378455 AGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGG 378514 Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 | | |||||| ||||| || ||||| | ||| || || |||||| ||||||||||| | Sbjct 378515 CCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCT 378574 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 | || ||| |||| || ||||||||| ||||| | || | || ||||| || | Sbjct 378575 GGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCT 378634 Query 118870 GGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCC 118928 | | || ||| || | | ||| | | || | || | | || | | | || || Sbjct 378635 GAGCCTCGAGGATCGAGTACCACAGCTTCTG-GGCGCGGATTGTCTTGCGGCCACGGCCT 378693 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || |||||||||| || | || |||||||| || || | || | |||||| Sbjct 378694 TCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCA 378753 Query 118989 GGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 119047 || || || | ||||| | ||| | ||| | ||| || ||| || ||||||||||| Sbjct 378754 GG-GCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATGAA 378812 Query 119048 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 119107 |||||| |||||||| ||||| |||||| || ||| ||| |||| || | || || Sbjct 378813 GAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTG 378872 Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 || | | || | || || | || ||| |||||||| || |||||||| | || Sbjct 378873 GTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGC 378932 Query 119168 GATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 || | ||| || || | |||| || || || |||||| ||| || || Sbjct 378933 GAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGAC 378992 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 119284 || ||||| |||| || || | || ||| || || || ||| || | Sbjct 378993 TCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGT 379052 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 || | | ||||| || || || ||||| || ||| || || || ||||| Sbjct 379053 AGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCA 379112 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | ||||| || ||||||| || ||||| ||| |||| | ||| ||||||||| Sbjct 379113 AGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCA 379172 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 || | ||| | || || || ||||||||||| || |||| |||||| |||| Sbjct 379173 CGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAA 379232 Query 119465 CA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 119522 | | || |||||| || |||||| |||| |||| ||||| || || Sbjct 379233 GAATTTACT--GGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAG 379290 Query 119523 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 119582 || |||| | || ||||| | ||||| || ||| ||| | | | || || ||| Sbjct 379291 ATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGC 379350 Query 119583 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 || |||| || ||||| ||||||| |||||| || Sbjct 379351 TTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTA 379391 >seq32 Length=314566 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||||||||||||||| |||||||| || |||||| || || Sbjct 225254 GCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCG 225313 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | ||| || || | |||| ||| ||||||||| Sbjct 225314 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATG 225373 Query 130136 CCCTCCACACACGCGAACGCAA 130157 ||||| ||| ||||| |||| Sbjct 225374 CCCTCGACAGCGGCGAAGGCAA 225395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434125468840