Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 187 3e-42 seq32 93.3 5e-14 seq14 93.3 5e-14 >seq1 Length=1559860 Score = 187 bits (206), Expect = 3e-42 Identities = 1011/1587 (64%), Gaps = 43/1587 (3%) Strand=Plus/Minus Query 104136 AGAGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAA 104194 ||||||||| | ||| | || |||||| |||| || || ||| || | ||||| | Sbjct 379411 AGAGAGACTTCAACTATCAGTACTTTGGTTTCAAGACGCTGGAGC-GATCGTATCTCCTG 379353 Query 104195 CGGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGT 104254 ||| || || | | ||| || ||| ||||| ||||||| || || |||| Sbjct 379352 AAGCTGGACGGCAAGATTGTCGAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGC 379293 Query 104255 ATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTA-- 104312 || || || ||||||| ||| |||| || ||| || |||||| || | Sbjct 379292 ATCTGGGGAGACAACATTGAGCGCGTCCTGGAAACCTACAACCTCATGTCC--AGTAAAT 379235 Query 104313 TGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCA 104372 | |||| ||||| |||| ||||||||||| || || || || || | ||| Sbjct 379234 TCTTCACCCACGCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCT 379175 Query 104373 GTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGG 104432 |||||||| ||| || ||||| ||| ||| | || ||||| | ||||| | | Sbjct 379174 CGTGCTTCCTCGTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAG- 379116 Query 104433 AGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAG 104490 | | ||||| | || || || ||| || ||||| || || || |||| | | Sbjct 379115 ACT-TGCGCCATGATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCG 379057 Query 104491 AGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 104550 || | ||| ||| || || || || || | || | |||| ||||| Sbjct 379056 TGCTACCGGATCCTACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCT 378997 Query 104551 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATC 104607 || || || ||| ||| || | || || | |||| || ||| ||| | Sbjct 378996 GCGAGTCTTCAACAACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGC 378937 Query 104608 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCT 104667 |||| |||| || ||||| |||||||| ||| || | || |||||||| | | Sbjct 378936 CTTCGCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAA 378877 Query 104668 CAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCA 104725 ||||| || | ||||| | |||| | ||||| |||||| || || ||||| || Sbjct 378876 GAACCACGGCAAGGAGGAAGTCCGCGCT--CGCGACCTCTTCCTTGCGCTGTGGATCCCC 378819 Query 104726 GATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AA 104784 || |||||||||||| | || ||| ||| |||| | ||| | ||| | || || || || Sbjct 378818 GACCTCTTCATGAAGCGTGTCGAGAAGAATGGCGACTGGACCCTCATGTGCCCCAACGAA 378759 Query 104785 GGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA 104844 || ||||| ||| |||| | || || |||||||| || | || ||||||||| Sbjct 378758 TGC-CCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTGTATGAAAAGTACGA 378700 Query 104845 GGAAGAAGGTCG-GGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTC 104902 | ||||| || ||| | ||| | | || | || | ||||| | | || ||| Sbjct 378699 GCGCGAAGGCCGTGGCCGCAA-GACAATCCGCGCC-CAGAAGCTGTGGTACTCGATCCTC 378642 Query 104903 AAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAG 104962 || |||| ||||||||||| | || | ||||| ||||| || || ||| ||| Sbjct 378641 GAGGCTCAGACCGAGACTGGCAACCCCTTTATGCTGTACAAGGATCATTGCAACAGGAAG 378582 Query 104963 AGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAA 105022 || || || ||||| ||||| || || ||||| ||||| || || || | || Sbjct 378581 AGCAACCAGAAGAACTTGGGAACCATTCGCAGCTCCAACCTCTGCACCGAGATTATCGAG 378522 Query 105023 TTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTAT 105082 | | | | || ||| || || || ||||| || || | || || ||| | | Sbjct 378521 TACTCGGCCCCCGACGAGGTTGCCGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTT 378462 Query 105083 GTGGATCCAGAGACAAAGACATTT--GATTATGAAAAACTCCACGAAGTTACGAAAACTG 105140 ||||| | ||| ||| || | || | |||| || ||||| || || | Sbjct 378461 GTGGA--CTACGACCAAGGCAAGTACGACTTCCAAAAGCTGCACGACGTCACCCGCGTGG 378404 Query 105141 TCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTA 105200 | | ||| || |||| | || || || |||||||| | || || | Sbjct 378403 TTGTCCGAAATCTCAACAAGATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCA 378344 Query 105201 AATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCA 105260 | || ||| | || ||||| |||||| |||||||||| || | || || | ||| Sbjct 378343 ACAGCAACATGCGGCATCGTCCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTTCC 378284 Query 105261 TTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTG 105320 || |||| | ||||| || ||| || || | || || || |||| Sbjct 378283 TTGCGCTTCGCATGCCCTTTGAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATTTTTG 378224 Query 105321 AGACCATGTATCACGCCGCTCTTGA-GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCA 105379 ||||||| || |||||||| ||||| |||| ||| |||| ||| || ||||| Sbjct 378223 AGACCATCTACCACGCCGC-CTTGACGGCGTCGGTGGAGCTGGCCAAGGAGGAGGGTCCC 378165 Query 105380 TATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAA 105439 || || || |||| ||||| || || |||| | || || ||||| |||| |||| Sbjct 378164 TACTCCACGTTCAAGGGATCTCCGGCCTCTGAAGGCATCCTGCAGTTTGACATGT-GGAA 378106 Query 105440 GGTGA----GACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAA 105495 |||| | || | ||| | || ||||| | |||||||| | ||||||||| | Sbjct 378105 CGTGACGCCGTCCGA-CTT--GTGGGAGTGGGATTCCCTCAAGGAGCAGATCAAGGAGCA 378049 Query 105496 GGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTT 105555 || |||| ||| || || | || || ||||| || || ||||| | || || | Sbjct 378048 CGGGATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTCT 377989 Query 105556 GGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGC 105615 ||| || || || ||||| || ||||||||| | ||||| || | | || | ||| || Sbjct 377988 GGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGGC 377929 Query 105616 GGGAGAGTTTGTGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCT 105672 ||| ||||| | | |||||| || |||| |||| ||| || || ||||| Sbjct 377928 GGGCGAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGAT---CTCGTCGACATGGGTCT 377872 Query 105673 CTGGTCCAAGGATATGAAGGATCTCAT 105699 ||||| | | |||||| ||| ||| Sbjct 377871 GTGGTCAGACGCCATGAAGAATCGCAT 377845 >seq32 Length=314566 Score = 93.3 bits (102), Expect = 5e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAG 94885 ||| ||||| ||||||||| |||| | ||| ||| | || | ||||||||||||||| | Sbjct 225382 TGTCGAGGGCATCTTCTTCAGTGGTGCATTC-GCGTCCATCTTTTGGCTCAAGAAGCGCG 225324 Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 94945 | |||||||| || || |||||| ||||| || || || ||||||||||| | ||| Sbjct 225323 GCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTGACGAGGGTTTGCACA 225264 Query 94946 AAGAGTTTGC 94955 || ||||| Sbjct 225263 CCGACTTTGC 225254 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/122 (75%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || |||||| |||| || || ||||||||| |||| ||||| | || | || Sbjct 225837 TGGACAGCCGAAGAGATAGACCTGTCCAAGGATTTGCACGACTGGAATAATCGCCTGAAC 225778 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || |||||||| | ||||| ||||| ||||||||||||||| || ||||| || Sbjct 225777 GACGATGAAAAGTATTTCATTTCTCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATC 225718 Query 94558 GT 94559 || Sbjct 225717 GT 225716 >seq14 Length=615434 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| || || || || ||||||| ||||||||| ||||| ||| | | |||| || Sbjct 203751 GGCGTCGATTTCGTCGATGAAGATGATGCATGGAGCATTTTTGCGGCCCTCGGCAAACAG 203810 Query 9763 ATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA- 9819 || | || | ||| || || ||||| |||||||| ||||| || | || || Sbjct 203811 GTCTCTGACTC--TTGACGGACCAACACCGACAAACATTTCCACGAATTCTGATCCGCTC 203868 Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || || | ||| || || || || || ||| ||||| |||||||| ||||| || Sbjct 203869 ACGCTGAA-GAACGGTACGCCGGACTCGCCAGCAGTGGCTTTTGCGAGAAGCGTCTTTCC 203927 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||||| ||| ||||||| ||| || || || ||||||||||| Sbjct 203928 AGTACCTGGAGGACCAGCGAGGATGGCGCCGCGGGGTATCTTGGCGCC 203975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259786584360