Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 500 9e-137
>seq1
Length=1559860
Score = 500 bits (554), Expect = 9e-137
Identities = 1166/1742 (67%), Gaps = 45/1742 (3%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|| ||||| ||||||||||| |||||||||||| |||||| ||| | |||||| |
Sbjct 377599 GTGCGCAAGTAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGAC 377658
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| | |||| ||| | |||| || |||| |||||||| |||||||||||||||||
Sbjct 377659 GTGATCTTGCCCATGGTTGGGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATA 377718
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACC-GACTTTTGCGGAATCTCCCAGATGGT 78368
| |||||||||||||| ||||| | | || ||| | ||| ||| ||||||| ||
Sbjct 377719 AAGGCACCGCGGTCGGCGGCCATCTGCACCACATGACGCT-GCGAAATTTCCCAGACCGT 377777
Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTAC--GCTCCCACCGG-C 78425
| ||| | ||||| | ||| | | |||| | | ||| | | || ||| |
Sbjct 377778 CTTGTACAGAGCCTTTACCTCGCCGGGAATGTT--GGGGATGTTCTGGATCGAGCCGTTC 377835
Query 78426 TCGCACAAT--TTC-ATTCTTAATTTGAGGGTT-CCAGCGATTGATCTTCTGAAGATCCC 78481
||| |||| | | |||||| || | | | ||| || || | ||||||
Sbjct 377836 TCGG-CAATGATGCGATTCTTCATG-GCGTCTGACCACAGACCCATGTCGACGAGATCCT 377893
Query 78482 GGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541
|| || |||| | | ||||||||| |||||| || ||| |||| ||||
Sbjct 377894 TGAGAAGCCATGGGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGT 377953
Query 78542 TGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCG 78601
||| |||||| |||||||| ||||||||| |||| ||||| | || || || || |
Sbjct 377954 TGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGG 378013
Query 78602 GCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG- 78660
||||||| |||| ||| || || || |||| || ||| |||||||| |||| |||
Sbjct 378014 GCATGGGCGCGAGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGG 378073
Query 78661 -----CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715
| ||||| || || || || | ||||||||| || ||||| || |
Sbjct 378074 AATCCCACTCCCACAAGTCGGACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTT 378133
Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATG 78775
| || ||||| || ||||||||||| ||| | |||||||||||||| || || |
Sbjct 378134 CAGAGGCCGGAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCG 378193
Query 78776 ACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT 78835
|| | || ||| |||||||| | | ||| || || |||||| |||||||| ||||
Sbjct 378194 ACGCCGTCAAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCT 378253
Query 78836 TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGA 78895
|| || || | | || ||| | |||| | ||||||| ||| || || ||||
Sbjct 378254 CGGGAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGA 378313
Query 78896 TAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCC 78955
| | || || || || ||||||||||| || || || | | | ||||| |||
Sbjct 378314 CACCAATGGGACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGA 378373
Query 78956 GATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGA 79015
||||||| ||| || || || || || || || || |||| || || ||
Sbjct 378374 CGTCGATGATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGA 378433
Query 79016 AATCAAAATGATTTCCTTTGATG--------AAAGTCGGT-AGGCACAGCGATGCCAGGT 79066
| || | | | |||| | | |||| ||| ||| || || || ||||
Sbjct 378434 AGTCGTACT---TGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGT 378490
Query 79067 TGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGA-- 79124
|||| ||||| |||||| ||| || |||||| || || ||||| | || ||
Sbjct 378491 TGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGC 378550
Query 79125 --CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAG 79182
||| ||||| || | ||||||||||||||||||| ||| || ||||||||
Sbjct 378551 TGCGA----ATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTAC 378606
Query 79183 CACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGG 79242
||| | || | || ||||| |||| || ||| | || ||| | | | ||
Sbjct 378607 AGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGG 378666
Query 79243 GCCCGGACAACCTTCTTGTACCGAC--CCTGTGCGA-CGTACGTCCGGTACAACTCGTTG 79299
|| |||| ||||| | || ||| ||| ||||| | ||||| | |
Sbjct 378667 GCGCGGATTG---TCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCA 378723
Query 79300 AAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAG 79359
|| | || || ||| |||| || || ||||| |||| |||||||| ||| ||||
Sbjct 378724 AACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAG 378783
Query 79360 TCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGG 79419
|| | | |||||| || || |||||||||||| ||||||||||| || |||||||
Sbjct 378784 TCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGG 378843
Query 79420 TCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATG 79479
||||| || | ||||| | ||| |||||| | || || || || || | ||
Sbjct 378844 TCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACA 378903
Query 79480 TCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGG 79539
||||||||||| |||||||| ||||||||||| | ||| |||||| |||||| |||
Sbjct 378904 TCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGG 378963
Query 79540 TTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACG 79599
| |||||| | ||| ||||||||||| ||||| |||||||| |||| ||||| | | |
Sbjct 378964 TCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTG 379023
Query 79600 CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATG 79659
||||| || ||| || | ||| | || |||||| | || | |||||
Sbjct 379024 CCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATA 379083
Query 79660 CCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATC 79719
|| |||| | || || || ||||| |||||| || |||||||||||||||||
Sbjct 379084 CCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCGATG 379143
Query 79720 GAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCG 79779
||| |||||||| |||| |||||||| || | ||| | ||| || |||
Sbjct 379144 CTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCG 379203
Query 79780 TTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCC 79839
||||||||||| || | ||||| |||||||| || | ||| || | ||| || |||
Sbjct 379204 TTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCC 379263
Query 79840 TTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGG 79899
||||||| | || ||| || ||||||||| || || ||||||| | || |||
Sbjct 379264 AGGACGCGCTCAATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGA 379323
Query 79900 GG 79901
||
Sbjct 379324 GG 379325
Score = 443 bits (490), Expect = 2e-119
Identities = 1171/1761 (66%), Gaps = 69/1761 (4%)
Strand=Plus/Minus
Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162
|||||| || | ||||||| || || ||||||||| || ||| || | ||| |||
Sbjct 379325 CCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCGCGTC 379266
Query 19163 CGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTT 19221
| || || ||| |||| ||| |||| || |||||||| ||||| | || ||||| ||
Sbjct 379265 CTGGAAACCTACAACCTCATGT-CCAGTAAATTCTTCACCCACGCCTCACCTACCCTCTT 379207
Query 19222 CAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGA 19281
|||||| || ||| | ||| | || || ||||| || | |||||||| ||
Sbjct 379206 CAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCGTCGACATGAAGGAAGA 379147
Query 19282 CAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGG 19341
|||||| |||||||||||||| || |||||| ||||| || || || | ||||
Sbjct 379146 CAGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATGATTTCTAAAATGGCCGG 379087
Query 19342 GGGTATCGG---GA---TCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395
|||||||| || ||||| || || || | | || | || ||
Sbjct 379086 CGGTATCGGCCTGAACGTCCACCGC------ATTCGTGCTACCGGATCCTACATTGCCGG 379033
Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455
|| ||||| | |||| |||| || ||||| || |||||||||||||| |||||
Sbjct 379032 CACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCAG 378973
Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515
|||||| |||| || ||| ||| || |||| | |||||||||||||| ||||| ||
Sbjct 378972 ATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTG 378913
Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575
|||||| || ||| | || ||||| || || | |||||| || | ||||| | ||
Sbjct 378912 GCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCG 378853
Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635
| ||||||||||||| || ||||||| || ||||| |||||| || || |||||
Sbjct 378852 CGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGAA 378793
Query 19636 GGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGG 19695
| | | || ||| ||| |||||||| ||||||||||||| || ||||| ||||||
Sbjct 378792 GAATGGCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGG 378733
Query 19696 CGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGC-CCAGGGCCGGTTCAAGAAGGTGG 19754
||| | ||| | | ||||| | |||| ||| | | ||||| | |||
Sbjct 378732 CGACGAGTTTGAGGCTTTGTATGAAAAGTACG-AGCGCGAAGGCCGTGGCCGCAAGACAA 378674
Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814
|||| |||| | | | ||| || ||||| | ||| |||||| |||| || |
Sbjct 378673 TCCGCGCCCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCAACCCCT 378614
Query 19815 ACATGTGCTACAAGGA-CGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC 19873
||| |||||||| | || ||| ||| || ||||||||| | | || |
Sbjct 378613 TTATGCTGTACAAGGATCATTGC-AACAGGAAGAGCAACCAGAAGAACTT----GGGAAC 378559
Query 19874 AAGTCG----TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGC 19929
| ||| |||||||| || || || || || ||| || || |||||| |||
Sbjct 378558 CATTCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTCGGCCCCCGACGAGGTTGC 378499
Query 19930 CGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCTCC-------- 19981
||| || || || || ||||| |||||| | || || || || | |
Sbjct 378498 CGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTTGT---GGACTACGACCAAGGCAA 378442
Query 19982 -TTCGACTTTGCCAAA--TTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGC 20038
| |||||| ||||| || |||| || ||||| || || || ||||| ||
Sbjct 378441 GTACGACTT--CCAAAAGCTGCACGACGTCACCCGCGTGGTTGTCCGAAATCTCAACAAG 378384
Query 20039 GTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGG 20098
||||||| ||| ||||| | | | || ||||| || ||||| || ||
Sbjct 378383 ATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCAACAGCAACATGCGGCATCGT 378324
Query 20099 CCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTC 20158
|| || | |||| || || ||| ||||||||| ||| | ||| || | | ||
Sbjct 378323 CCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTTCCTTGCGCTTCGCATGCCCTTT 378264
Query 20159 GACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCC 20218
|| |||| |||| |||||||| |||||| || || ||| || | |||||||| |||
Sbjct 378263 GAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATTTTTGAGACCATCTACCACGCCGCC 378204
Query 20219 CTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCG 20278
| || ||| || || ||||| ||||| || || ||| ||||||||||| ||
Sbjct 378203 TTGACGGCGTCGGTGGAGCTGGCCAAGGAGGAGGGTCCCTACTCCACGTTCAAGGGATCT 378144
Query 20279 CCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTT-TTG 20337
|| || || || || ||||| ||| ||||||||| ||| || | || || | |
Sbjct 378143 CCGGCCTCTGAAGGCATCCTGCAGTTTGACATGTGGAACGTGACGCCGTCCGACTTGTGG 378084
Query 20338 GAGCG-----CCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTC 20392
||| | ||||||||| |||||||| |||||| ||||||||||| |||| ||
Sbjct 378083 GAGTGGGATTCCCTCAAGGAGCAGATCAAGGAGCACGGGATTCGCAACTCGCTGCTGCTC 378024
Query 20393 GCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCG 20452
||||||||||| || || || || | ||||| |||| ||||||||| ||||||||
Sbjct 378023 GCGCCCATGCCCACGGCGTCCACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCC 377964
Query 20453 TACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAG 20512
|||||| ||||||| ||| ||| || ||||| || |||||| || ||| |||
Sbjct 377963 TACACGTCCAACATTTACCAGCGACGCGTCCTGGCGGGCGAGTTC--CA-GGTCGTCAA- 377908
Query 20513 CACCTGG-TCCGCGA----CTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAAT- 20566
| | ||| | | | | || | | | || | | ||||||| | || ||||||
Sbjct 377907 CCCATGGCTTCTCAAGGATCTCGTCG-ACATGGGTCTGTGGTCAGACGCCATGAAGAATC 377849
Query 20567 GAA--ATTGTCCGAG-CCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTC 20620
| | |||| ||||| |||| || ||||| ||| | || ||| | |
Sbjct 377848 GCATCATTG-CCGAGAACGGCTCGA---TCCAGAACATCCCCAACATTCCCGGCGAGGTA 377793
Query 20621 AAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCC 20680
|||| | |||| ||| || |||||||| | ||| | | | ||||| |||
Sbjct 377792 AAGGCTCTGTACAAGACGGTCTGGGAAATTTCGCAGCGTCATGTGGTGCAGATGGCCGCC 377733
Query 20681 GATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGC 20740
|| ||||| |||| ||||||||||||||||| ||||| | |||| || | || | |
Sbjct 377732 GACCGCGGTGCCTTTATCGACCAGTCCCAGTCTCTCAACATTCACATGAAGGACCCAACC 377673
Query 20741 CTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATG 20800
||| ||| | | || ||||| | ||| ||| | ||| |||||||| ||||||
Sbjct 377672 ATGGGCAAGATCACGTCGATGCACTTTGCCGGGTGGAAGCTGGGTCTCAAGACTGGCATG 377613
Query 20801 TACTATCTGCGGACCCGAGCC 20821
||||| |||| || | ||||
Sbjct 377612 TACTACTTGCGCACGCAAGCC 377592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548523846938160
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