Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 500 9e-137 >seq1 Length=1559860 Score = 500 bits (554), Expect = 9e-137 Identities = 1166/1742 (67%), Gaps = 45/1742 (3%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || ||||| ||||||||||| |||||||||||| |||||| ||| | |||||| | Sbjct 377599 GTGCGCAAGTAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGAC 377658 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| | |||| || |||| |||||||| ||||||||||||||||| Sbjct 377659 GTGATCTTGCCCATGGTTGGGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATA 377718 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACC-GACTTTTGCGGAATCTCCCAGATGGT 78368 | |||||||||||||| ||||| | | || ||| | ||| ||| ||||||| || Sbjct 377719 AAGGCACCGCGGTCGGCGGCCATCTGCACCACATGACGCT-GCGAAATTTCCCAGACCGT 377777 Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTAC--GCTCCCACCGG-C 78425 | ||| | ||||| | ||| | | |||| | | ||| | | || ||| | Sbjct 377778 CTTGTACAGAGCCTTTACCTCGCCGGGAATGTT--GGGGATGTTCTGGATCGAGCCGTTC 377835 Query 78426 TCGCACAAT--TTC-ATTCTTAATTTGAGGGTT-CCAGCGATTGATCTTCTGAAGATCCC 78481 ||| |||| | | |||||| || | | | ||| || || | |||||| Sbjct 377836 TCGG-CAATGATGCGATTCTTCATG-GCGTCTGACCACAGACCCATGTCGACGAGATCCT 377893 Query 78482 GGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541 || || |||| | | ||||||||| |||||| || ||| |||| |||| Sbjct 377894 TGAGAAGCCATGGGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGT 377953 Query 78542 TGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCG 78601 ||| |||||| |||||||| ||||||||| |||| ||||| | || || || || | Sbjct 377954 TGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGG 378013 Query 78602 GCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG- 78660 ||||||| |||| ||| || || || |||| || ||| |||||||| |||| ||| Sbjct 378014 GCATGGGCGCGAGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGG 378073 Query 78661 -----CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 | ||||| || || || || | ||||||||| || ||||| || | Sbjct 378074 AATCCCACTCCCACAAGTCGGACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTT 378133 Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATG 78775 | || ||||| || ||||||||||| ||| | |||||||||||||| || || | Sbjct 378134 CAGAGGCCGGAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCG 378193 Query 78776 ACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT 78835 || | || ||| |||||||| | | ||| || || |||||| |||||||| |||| Sbjct 378194 ACGCCGTCAAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCT 378253 Query 78836 TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGA 78895 || || || | | || ||| | |||| | ||||||| ||| || || |||| Sbjct 378254 CGGGAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGA 378313 Query 78896 TAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCC 78955 | | || || || || ||||||||||| || || || | | | ||||| ||| Sbjct 378314 CACCAATGGGACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGA 378373 Query 78956 GATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGA 79015 ||||||| ||| || || || || || || || || |||| || || || Sbjct 378374 CGTCGATGATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGA 378433 Query 79016 AATCAAAATGATTTCCTTTGATG--------AAAGTCGGT-AGGCACAGCGATGCCAGGT 79066 | || | | | |||| | | |||| ||| ||| || || || |||| Sbjct 378434 AGTCGTACT---TGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGT 378490 Query 79067 TGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGA-- 79124 |||| ||||| |||||| ||| || |||||| || || ||||| | || || Sbjct 378491 TGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGC 378550 Query 79125 --CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAG 79182 ||| ||||| || | ||||||||||||||||||| ||| || |||||||| Sbjct 378551 TGCGA----ATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTAC 378606 Query 79183 CACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGG 79242 ||| | || | || ||||| |||| || ||| | || ||| | | | || Sbjct 378607 AGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGG 378666 Query 79243 GCCCGGACAACCTTCTTGTACCGAC--CCTGTGCGA-CGTACGTCCGGTACAACTCGTTG 79299 || |||| ||||| | || ||| ||| ||||| | ||||| | | Sbjct 378667 GCGCGGATTG---TCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCA 378723 Query 79300 AAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAG 79359 || | || || ||| |||| || || ||||| |||| |||||||| ||| |||| Sbjct 378724 AACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAG 378783 Query 79360 TCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGG 79419 || | | |||||| || || |||||||||||| ||||||||||| || ||||||| Sbjct 378784 TCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGG 378843 Query 79420 TCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATG 79479 ||||| || | ||||| | ||| |||||| | || || || || || | || Sbjct 378844 TCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACA 378903 Query 79480 TCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGG 79539 ||||||||||| |||||||| ||||||||||| | ||| |||||| |||||| ||| Sbjct 378904 TCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGG 378963 Query 79540 TTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACG 79599 | |||||| | ||| ||||||||||| ||||| |||||||| |||| ||||| | | | Sbjct 378964 TCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTG 379023 Query 79600 CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATG 79659 ||||| || ||| || | ||| | || |||||| | || | ||||| Sbjct 379024 CCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATA 379083 Query 79660 CCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATC 79719 || |||| | || || || ||||| |||||| || ||||||||||||||||| Sbjct 379084 CCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCGATG 379143 Query 79720 GAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCG 79779 ||| |||||||| |||| |||||||| || | ||| | ||| || ||| Sbjct 379144 CTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCG 379203 Query 79780 TTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCC 79839 ||||||||||| || | ||||| |||||||| || | ||| || | ||| || ||| Sbjct 379204 TTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCC 379263 Query 79840 TTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGG 79899 ||||||| | || ||| || ||||||||| || || ||||||| | || ||| Sbjct 379264 AGGACGCGCTCAATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGA 379323 Query 79900 GG 79901 || Sbjct 379324 GG 379325 Score = 443 bits (490), Expect = 2e-119 Identities = 1171/1761 (66%), Gaps = 69/1761 (4%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | ||||||| || || ||||||||| || ||| || | ||| ||| Sbjct 379325 CCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCGCGTC 379266 Query 19163 CGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTT 19221 | || || ||| |||| ||| |||| || |||||||| ||||| | || ||||| || Sbjct 379265 CTGGAAACCTACAACCTCATGT-CCAGTAAATTCTTCACCCACGCCTCACCTACCCTCTT 379207 Query 19222 CAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGA 19281 |||||| || ||| | ||| | || || ||||| || | |||||||| || Sbjct 379206 CAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCGTCGACATGAAGGAAGA 379147 Query 19282 CAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGG 19341 |||||| |||||||||||||| || |||||| ||||| || || || | |||| Sbjct 379146 CAGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATGATTTCTAAAATGGCCGG 379087 Query 19342 GGGTATCGG---GA---TCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395 |||||||| || ||||| || || || | | || | || || Sbjct 379086 CGGTATCGGCCTGAACGTCCACCGC------ATTCGTGCTACCGGATCCTACATTGCCGG 379033 Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 || ||||| | |||| |||| || ||||| || |||||||||||||| ||||| Sbjct 379032 CACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCAG 378973 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 |||||| |||| || ||| ||| || |||| | |||||||||||||| ||||| || Sbjct 378972 ATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTG 378913 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 |||||| || ||| | || ||||| || || | |||||| || | ||||| | || Sbjct 378912 GCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCG 378853 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 | ||||||||||||| || ||||||| || ||||| |||||| || || ||||| Sbjct 378852 CGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGAA 378793 Query 19636 GGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGG 19695 | | | || ||| ||| |||||||| ||||||||||||| || ||||| |||||| Sbjct 378792 GAATGGCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGG 378733 Query 19696 CGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGC-CCAGGGCCGGTTCAAGAAGGTGG 19754 ||| | ||| | | ||||| | |||| ||| | | ||||| | ||| Sbjct 378732 CGACGAGTTTGAGGCTTTGTATGAAAAGTACG-AGCGCGAAGGCCGTGGCCGCAAGACAA 378674 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 |||| |||| | | | ||| || ||||| | ||| |||||| |||| || | Sbjct 378673 TCCGCGCCCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCAACCCCT 378614 Query 19815 ACATGTGCTACAAGGA-CGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC 19873 ||| |||||||| | || ||| ||| || ||||||||| | | || | Sbjct 378613 TTATGCTGTACAAGGATCATTGC-AACAGGAAGAGCAACCAGAAGAACTT----GGGAAC 378559 Query 19874 AAGTCG----TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGC 19929 | ||| |||||||| || || || || || ||| || || |||||| ||| Sbjct 378558 CATTCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTCGGCCCCCGACGAGGTTGC 378499 Query 19930 CGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCTCC-------- 19981 ||| || || || || ||||| |||||| | || || || || | | Sbjct 378498 CGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTTGT---GGACTACGACCAAGGCAA 378442 Query 19982 -TTCGACTTTGCCAAA--TTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGC 20038 | |||||| ||||| || |||| || ||||| || || || ||||| || Sbjct 378441 GTACGACTT--CCAAAAGCTGCACGACGTCACCCGCGTGGTTGTCCGAAATCTCAACAAG 378384 Query 20039 GTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGG 20098 ||||||| ||| ||||| | | | || ||||| || ||||| || || Sbjct 378383 ATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCAACAGCAACATGCGGCATCGT 378324 Query 20099 CCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTC 20158 || || | |||| || || ||| ||||||||| ||| | ||| || | | || Sbjct 378323 CCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTTCCTTGCGCTTCGCATGCCCTTT 378264 Query 20159 GACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCC 20218 || |||| |||| |||||||| |||||| || || ||| || | |||||||| ||| Sbjct 378263 GAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATTTTTGAGACCATCTACCACGCCGCC 378204 Query 20219 CTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCG 20278 | || ||| || || ||||| ||||| || || ||| ||||||||||| || Sbjct 378203 TTGACGGCGTCGGTGGAGCTGGCCAAGGAGGAGGGTCCCTACTCCACGTTCAAGGGATCT 378144 Query 20279 CCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTT-TTG 20337 || || || || || ||||| ||| ||||||||| ||| || | || || | | Sbjct 378143 CCGGCCTCTGAAGGCATCCTGCAGTTTGACATGTGGAACGTGACGCCGTCCGACTTGTGG 378084 Query 20338 GAGCG-----CCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTC 20392 ||| | ||||||||| |||||||| |||||| ||||||||||| |||| || Sbjct 378083 GAGTGGGATTCCCTCAAGGAGCAGATCAAGGAGCACGGGATTCGCAACTCGCTGCTGCTC 378024 Query 20393 GCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCG 20452 ||||||||||| || || || || | ||||| |||| ||||||||| |||||||| Sbjct 378023 GCGCCCATGCCCACGGCGTCCACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCC 377964 Query 20453 TACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAG 20512 |||||| ||||||| ||| ||| || ||||| || |||||| || ||| ||| Sbjct 377963 TACACGTCCAACATTTACCAGCGACGCGTCCTGGCGGGCGAGTTC--CA-GGTCGTCAA- 377908 Query 20513 CACCTGG-TCCGCGA----CTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAAT- 20566 | | ||| | | | | || | | | || | | ||||||| | || |||||| Sbjct 377907 CCCATGGCTTCTCAAGGATCTCGTCG-ACATGGGTCTGTGGTCAGACGCCATGAAGAATC 377849 Query 20567 GAA--ATTGTCCGAG-CCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTC 20620 | | |||| ||||| |||| || ||||| ||| | || ||| | | Sbjct 377848 GCATCATTG-CCGAGAACGGCTCGA---TCCAGAACATCCCCAACATTCCCGGCGAGGTA 377793 Query 20621 AAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCC 20680 |||| | |||| ||| || |||||||| | ||| | | | ||||| ||| Sbjct 377792 AAGGCTCTGTACAAGACGGTCTGGGAAATTTCGCAGCGTCATGTGGTGCAGATGGCCGCC 377733 Query 20681 GATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGC 20740 || ||||| |||| ||||||||||||||||| ||||| | |||| || | || | | Sbjct 377732 GACCGCGGTGCCTTTATCGACCAGTCCCAGTCTCTCAACATTCACATGAAGGACCCAACC 377673 Query 20741 CTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATG 20800 ||| ||| | | || ||||| | ||| ||| | ||| |||||||| |||||| Sbjct 377672 ATGGGCAAGATCACGTCGATGCACTTTGCCGGGTGGAAGCTGGGTCTCAAGACTGGCATG 377613 Query 20801 TACTATCTGCGGACCCGAGCC 20821 ||||| |||| || | |||| Sbjct 377612 TACTACTTGCGCACGCAAGCC 377592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523846938160