Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 197 2e-45 seq19 143 3e-29 seq32 109 6e-19 >seq1 Length=1559860 Score = 197 bits (218), Expect = 2e-45 Identities = 506/763 (66%), Gaps = 8/763 (1%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || || | || ||| || ||| || ||| ||| Sbjct 379325 CCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCGCGTC 379266 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 | || || ||| || | ||| | || | ||| || |||||| | || ||||| ||| Sbjct 379265 CTGGAAACCTACAACCTCATGTCCAGTAAATTCTTCACCCACGCCTCACCTACCCTCTTC 379206 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| || ||| ||| |||| | || |||||||| || | |||||||| ||| Sbjct 379205 AACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCGTCGACATGAAGGAAGAC 379146 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 ||||| ||||||||||| || |||||| || ||| || || || | | || Sbjct 379145 AGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATGATTTCTAAAATGGCCGGC 379086 Query 53420 GGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 |||||||| | || || | || | ||||| | ||| | || || || | Sbjct 379085 GGTATCGGCCTGAACG--TCCACCGCATTCGTGCTACCGGATCCTACATTGCCGGCACCA 379028 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 ||||| | | | || |||| || ||||| || |||||||||||||| ||| | |||| Sbjct 379027 ACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCAGATACG 378968 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || |||| || || ||||| ||| | |||||||||||||| ||||| ||||||| Sbjct 378967 TCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTGGCACG 378908 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 |||| | | || || || || || | ||| || || | || || | ||| | Sbjct 378907 CCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCGCGCTC 378848 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 | ||||| || || |||||||| || |||||||||||| | || |||||| | | Sbjct 378847 GCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGAAGAATG 378788 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAG 53776 || ||| ||| |||||||| ||||| ||||| || ||| | | || |||||| || Sbjct 378787 GCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTG-CTACGGCGAC 378729 Query 53777 GAGTTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAA 53835 |||||| | | ||||| | ||||| || | | ||||| | |||| || Sbjct 378728 GAGTTTGAGGCTTTGTATGAAAAGTACG-AGCGCGAAGGCCGTGGCCGCAAGACAATCCG 378670 Query 53836 GGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACAT 53895 || | || | ||| | | |||||| || ||| ||||| || | || | || Sbjct 378669 CGCCCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTTAT 378610 Query 53896 GTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | ||||||||| |||| ||||||||||||||||||| Sbjct 378609 GCTGTACAAGGATCATTGCAACAGGAAGAGCAACCAGAAGAAC 378567 Score = 134 bits (148), Expect = 2e-26 Identities = 304/448 (68%), Gaps = 13/448 (3%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| | ||||| ||||| || ||||| ||| | ||||| |||||||| Sbjct 378041 CGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTCTGGGCAAC 377982 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| |||||| ||||||| |||| ||| || ||| || || ||| Sbjct 377981 AACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGGCGGGCGAG 377922 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGA-ACCC 55662 || | ||||| || ||||||| || | || |||| | | Sbjct 377921 TTCCAGGTCGTCAACCCATGGCTTCTCAAGGATCTCGTCGACATGGGTCTGTGGTCAGAC 377862 Query 55663 GCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGAT 55716 || || |||| || || |||| |||||| || ||||||| | | || Sbjct 377861 GCC-ATGAAGAATCGCATCATTGCCGAGAACGGC---TCGATCCAGAACATCCCCAACAT 377806 Query 55717 TCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 ||| | ||| | |||| | ||| |||||| ||||| ||| | ||| | || Sbjct 377805 TCC-CGGCGAGGTAAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGCAGCGTCATGTGG 377747 Query 55776 TTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA 55835 | | ||| || || || ||||| | |||||||||||||||||||| ||||| || Sbjct 377746 TGCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGTCTCTCAACATTCACA 377687 Query 55836 TGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGAC 55895 || || | || | ||| |||| | | |||||||||||| |||||||||| ||| | Sbjct 377686 TGAAGGACCCAACCATGGGCAAGATCACGTCGATGCACTTTGCCGGGTGGAAGCTGGGTC 377627 Query 55896 TCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||||| || |||||||| |||| || Sbjct 377626 TCAAGACTGGCATGTACTACTTGCGCAC 377599 >seq19 Length=546703 Score = 143 bits (158), Expect = 3e-29 Identities = 228/327 (70%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 117274 GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATC 117333 ||| || ||||||| ||||||| || || || || ||||||| | || || || || Sbjct 221366 GAAGATCTTCTTGGCGAACGGTGCCAGACGTGTAAACGTGTAACGGGGACTAGCGGCGTC 221425 Query 117334 CTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTT 117393 ||||||||||||||| | ||| || | || || || || | || || | || || Sbjct 221426 GGAGCCACCAGCAAGACGGGAACCAAAGTTGCCGCTTGGTTCGAGGATATTGATATTATT 221485 Query 117394 GGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATG 117453 || || ||||||||||| || ||| || ||| || || ||| || || ||||| Sbjct 221486 GGAACCGACAAAGTTTTGTGCTAAGCCGATAATGGTCTGCTGCAGGGAAGCTTCGCCATG 221545 Query 117454 GTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGT 117513 |||||||| |||||||| | || || || || || | | | ||||| |||| || Sbjct 221546 ATGATACGCAGTCTGCTCAGAGACATAACCAGCAAGTTCAACGACCTTTTTGTCCTTGGT 221605 Query 117514 CAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGC 117573 |||||| |||| ||| ||||||| || || ||||||| ||||||| || || Sbjct 221606 CAGGTTTCGTTTGAAGCAAGCATAAAGAACTTTTCGCTGACCGGGCTTCAATCCGTCAAT 221665 Query 117574 CACGTGAGGGATCGAACGCTTGATGTC 117600 |||| ||||| |||||| || |||| Sbjct 221666 CACGGACGGGATGGAACGCATGTTGTC 221692 >seq32 Length=314566 Score = 109 bits (120), Expect = 6e-19 Identities = 301/453 (66%), Gaps = 14/453 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||| || ||||| ||||||||||||||||| || ||| ||||| |||||||| Sbjct 224966 TATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCATA 225025 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 | || || || ||| || ||| | ||| || ||| | ||| ||| Sbjct 225026 AAATCAAACGGATTCGCTGTCTTGTACAC---CTTTTCATTCCCGAGAGCAACCAACAGG 225082 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || |||| ||||| ||| |||| | | | |||||||| || | Sbjct 225083 CGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGAAGAGCG 225142 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697 |||||||| ||||| || | || || ||| | | | | ||| || | || | Sbjct 225143 CACGGCAGAGCCTCCGTCAGGAAATCTTGCTCAA--TGGTGACGGCATCGGTGATGATTT 225200 Query 74698 TGTGAATGTCTTTGGAAGGGCACT-TTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 || ||| |||| | || ||| | | || ||||||| ||| | || | |||| Sbjct 225201 CTTGGATGA-TTTGCTTGCTTGCTCTTTGCTTGAGATGAGAGTGCAGCAGGCATG-CAAA 225258 Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 || ||| | || || || | | ||| | ||| || || || | ||| || ||||| Sbjct 225259 GTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGGCAT 225318 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 || || |||||||| | ||||||||||| ||| | |||||||||||||||||| || Sbjct 225319 GAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATGCCCTC 225378 Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||| || ||||| || | ||||| ||||| Sbjct 225379 GACAGCGGCGAAGGCAACCAATCGTTGGGCGAA 225411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215049212200