Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 197 2e-45
seq19 143 3e-29
seq32 109 6e-19
>seq1
Length=1559860
Score = 197 bits (218), Expect = 2e-45
Identities = 506/763 (66%), Gaps = 8/763 (1%)
Strand=Plus/Minus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| || || | || ||| || ||| || ||| |||
Sbjct 379325 CCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCGCGTC 379266
Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
| || || ||| || | ||| | || | ||| || |||||| | || ||||| |||
Sbjct 379265 CTGGAAACCTACAACCTCATGTCCAGTAAATTCTTCACCCACGCCTCACCTACCCTCTTC 379206
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
||||| || ||| ||| |||| | || |||||||| || | |||||||| |||
Sbjct 379205 AACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCGTCGACATGAAGGAAGAC 379146
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
||||| ||||||||||| || |||||| || ||| || || || | | ||
Sbjct 379145 AGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATGATTTCTAAAATGGCCGGC 379086
Query 53420 GGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
|||||||| | || || | || | ||||| | ||| | || || || |
Sbjct 379085 GGTATCGGCCTGAACG--TCCACCGCATTCGTGCTACCGGATCCTACATTGCCGGCACCA 379028
Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537
||||| | | | || |||| || ||||| || |||||||||||||| ||| | ||||
Sbjct 379027 ACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCAGATACG 378968
Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597
|| |||| || || ||||| ||| | |||||||||||||| ||||| |||||||
Sbjct 378967 TCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTGGCACG 378908
Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657
|||| | | || || || || || | ||| || || | || || | ||| |
Sbjct 378907 CCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCGCGCTC 378848
Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717
| ||||| || || |||||||| || |||||||||||| | || |||||| | |
Sbjct 378847 GCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGAAGAATG 378788
Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAG 53776
|| ||| ||| |||||||| ||||| ||||| || ||| | | || |||||| ||
Sbjct 378787 GCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTG-CTACGGCGAC 378729
Query 53777 GAGTTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAA 53835
|||||| | | ||||| | ||||| || | | ||||| | |||| ||
Sbjct 378728 GAGTTTGAGGCTTTGTATGAAAAGTACG-AGCGCGAAGGCCGTGGCCGCAAGACAATCCG 378670
Query 53836 GGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACAT 53895
|| | || | ||| | | |||||| || ||| ||||| || | || | ||
Sbjct 378669 CGCCCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTTAT 378610
Query 53896 GTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
| ||||||||| |||| |||||||||||||||||||
Sbjct 378609 GCTGTACAAGGATCATTGCAACAGGAAGAGCAACCAGAAGAAC 378567
Score = 134 bits (148), Expect = 2e-26
Identities = 304/448 (68%), Gaps = 13/448 (3%)
Strand=Plus/Minus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||||| ||||| | ||||| ||||| || ||||| ||| | ||||| ||||||||
Sbjct 378041 CGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTCTGGGCAAC 377982
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| |||||| ||||||| |||| ||| || ||| || || |||
Sbjct 377981 AACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGGCGGGCGAG 377922
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGA-ACCC 55662
|| | ||||| || ||||||| || | || |||| | |
Sbjct 377921 TTCCAGGTCGTCAACCCATGGCTTCTCAAGGATCTCGTCGACATGGGTCTGTGGTCAGAC 377862
Query 55663 GCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGAT 55716
|| || |||| || || |||| |||||| || ||||||| | | ||
Sbjct 377861 GCC-ATGAAGAATCGCATCATTGCCGAGAACGGC---TCGATCCAGAACATCCCCAACAT 377806
Query 55717 TCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775
||| | ||| | |||| | ||| |||||| ||||| ||| | ||| | ||
Sbjct 377805 TCC-CGGCGAGGTAAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGCAGCGTCATGTGG 377747
Query 55776 TTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA 55835
| | ||| || || || ||||| | |||||||||||||||||||| ||||| ||
Sbjct 377746 TGCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGTCTCTCAACATTCACA 377687
Query 55836 TGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGAC 55895
|| || | || | ||| |||| | | |||||||||||| |||||||||| ||| |
Sbjct 377686 TGAAGGACCCAACCATGGGCAAGATCACGTCGATGCACTTTGCCGGGTGGAAGCTGGGTC 377627
Query 55896 TCAAGACGGGTATGTACTATCTGCGGAC 55923
||||||| || |||||||| |||| ||
Sbjct 377626 TCAAGACTGGCATGTACTACTTGCGCAC 377599
>seq19
Length=546703
Score = 143 bits (158), Expect = 3e-29
Identities = 228/327 (70%), Gaps = 0/327 (0%)
Strand=Plus/Plus
Query 117274 GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATC 117333
||| || ||||||| ||||||| || || || || ||||||| | || || || ||
Sbjct 221366 GAAGATCTTCTTGGCGAACGGTGCCAGACGTGTAAACGTGTAACGGGGACTAGCGGCGTC 221425
Query 117334 CTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTT 117393
||||||||||||||| | ||| || | || || || || | || || | || ||
Sbjct 221426 GGAGCCACCAGCAAGACGGGAACCAAAGTTGCCGCTTGGTTCGAGGATATTGATATTATT 221485
Query 117394 GGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATG 117453
|| || ||||||||||| || ||| || ||| || || ||| || || |||||
Sbjct 221486 GGAACCGACAAAGTTTTGTGCTAAGCCGATAATGGTCTGCTGCAGGGAAGCTTCGCCATG 221545
Query 117454 GTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGT 117513
|||||||| |||||||| | || || || || || | | | ||||| |||| ||
Sbjct 221546 ATGATACGCAGTCTGCTCAGAGACATAACCAGCAAGTTCAACGACCTTTTTGTCCTTGGT 221605
Query 117514 CAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGC 117573
|||||| |||| ||| ||||||| || || ||||||| ||||||| || ||
Sbjct 221606 CAGGTTTCGTTTGAAGCAAGCATAAAGAACTTTTCGCTGACCGGGCTTCAATCCGTCAAT 221665
Query 117574 CACGTGAGGGATCGAACGCTTGATGTC 117600
|||| ||||| |||||| || ||||
Sbjct 221666 CACGGACGGGATGGAACGCATGTTGTC 221692
>seq32
Length=314566
Score = 109 bits (120), Expect = 6e-19
Identities = 301/453 (66%), Gaps = 14/453 (3%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| ||||| || ||||| ||||||||||||||||| || ||| ||||| ||||||||
Sbjct 224966 TATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCATA 225025
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579
| || || || ||| || ||| | ||| || ||| | ||| |||
Sbjct 225026 AAATCAAACGGATTCGCTGTCTTGTACAC---CTTTTCATTCCCGAGAGCAACCAACAGG 225082
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
|| || || || |||| ||||| ||| |||| | | | |||||||| || |
Sbjct 225083 CGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGAAGAGCG 225142
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697
|||||||| ||||| || | || || ||| | | | | ||| || | || |
Sbjct 225143 CACGGCAGAGCCTCCGTCAGGAAATCTTGCTCAA--TGGTGACGGCATCGGTGATGATTT 225200
Query 74698 TGTGAATGTCTTTGGAAGGGCACT-TTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755
|| ||| |||| | || ||| | | || ||||||| ||| | || | ||||
Sbjct 225201 CTTGGATGA-TTTGCTTGCTTGCTCTTTGCTTGAGATGAGAGTGCAGCAGGCATG-CAAA 225258
Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815
|| ||| | || || || | | ||| | ||| || || || | ||| || |||||
Sbjct 225259 GTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGGCAT 225318
Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875
|| || |||||||| | ||||||||||| ||| | |||||||||||||||||| ||
Sbjct 225319 GAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATGCCCTC 225378
Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
|||| || ||||| || | ||||| |||||
Sbjct 225379 GACAGCGGCGAAGGCAACCAATCGTTGGGCGAA 225411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215049212200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |