Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq8 163 2e-35
seq36 95.1 1e-14
>seq8
Length=988098
Score = 163 bits (180), Expect = 2e-35
Identities = 281/402 (70%), Gaps = 12/402 (3%)
Strand=Plus/Plus
Query 30061 CACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117
|||||| ||||| | ||| ||||||| || || || ||||||||| || |||
Sbjct 209012 CACGTAGAACTGCGCAAACA---CGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCG 209068
Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177
| |||||| |||| || |||||| | | ||| | || || || ||| ||| |
Sbjct 209069 CGCGTTCCACGCGCTCATGATGATCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGAT 209128
Query 30178 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30237
| ||| ||||| || |||||| | |||| |||||| | | | |||| ||||||
Sbjct 209129 GACGTCGGCGAGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTC 209188
Query 30238 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30297
||| || || |||| ||||||||| ||||| || || || ||||| ||||| || | |||
Sbjct 209189 TGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTG 209248
Query 30298 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30357
| | |||| |||| | || || | || |||||| ||||||| ||||| || ||
Sbjct 209249 CGTCAGGCCCAGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCC 209308
Query 30358 --CTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTC 30414
| || | |||||| | ||||| ||| ||||| || ||||||||||||||| |
Sbjct 209309 GACGTCGCTGAGAGCCCG--GGAGTCGGTGTTGCCCTC-GATGAACCACAGCAGCTCGGC 209365
Query 30415 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456
|||||||| | ||| |||| ||| || |||||||| ||
Sbjct 209366 GACGACGGCGCGCAGAAACACCCGCTTCGTGGTGAGGAGCGG 209407
>seq36
Length=277325
Score = 95.1 bits (104), Expect = 1e-14
Identities = 134/181 (74%), Gaps = 8/181 (4%)
Strand=Plus/Minus
Query 52730 CGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52788
||||||||| || | || | ||| | ||| |||| |||||||||||||||||
Sbjct 33616 CGTCAAGGTCCGGGTTCGGACAACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCTCG 33557
Query 52789 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52846
|||||| |||||||| ||| || | | ||| | | | |||||||||||||||| |
Sbjct 33556 TCACGGA-CAAAAGGGCACGATTGGTGTGACGTACCGGC--AGGAGGACATGCCCTTT-A 33501
Query 52847 CAAGG-ACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 52905
|| || | ||||| ||| ||| ||||||||||||| |||||| |||| || | ||||
Sbjct 33500 CACGGGAAGGGGTCACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGA 33441
Query 52906 C 52906
|
Sbjct 33440 C 33440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406309711684788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |