Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq31 95.1 8e-15 seq3 86.0 4e-12 >seq31 Length=345369 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || |||| || | |||||| ||| ||||| || ||||| || || | Sbjct 218078 GCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 218019 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || ||||||| |||||||| || ||||| || || || || ||||| ||||| Sbjct 218018 CAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGG 217959 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | || || | || ||||| ||||| Sbjct 217958 GATGCCCTCCTTGTCTTGGAT-TTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCA 217900 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || || || || || | || || || || |||||||| Sbjct 217899 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851 Score = 91.5 bits (100), Expect = 9e-14 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||||||||| || || | || |||| | | || ||||| || ||||| ||||| Sbjct 218498 CTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAA 218439 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | ||||| || || || || | |||||||||||| ||| ||| | || || Sbjct 218438 GATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT-TGAATTTTCGACTTCACAT 218380 Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| || || |||||| || | || || || || ||||| | ||| || | Sbjct 218379 TATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGA 218320 Query 34694 CAAAAATCTGCATG 34707 | |||||||||||| Sbjct 218319 CGAAAATCTGCATG 218306 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | |||| ||| || ||| ||||| || ||||| || || | Sbjct 217849 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 217790 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || |||||||| ||||| || || ||||| ||||| ||||| Sbjct 217789 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 217730 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| ||| | || || | || ||||| |||||| Sbjct 217729 ATGCCCTCCTTGTCT-TGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCAC 217671 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || ||||| | || || || || || |||||| Sbjct 217670 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 217622 >seq3 Length=1259731 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || |||| |||||| || || ||||||||||| || ||||| || || | Sbjct 602964 CGCCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGG 603023 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | || || || || || || ||||| || | ||||| ||||| || | Sbjct 603024 CCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGG 603083 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||||| | || || | || ||||| |||| Sbjct 603084 GGATGCCCTCCTTGTCCTGGATCTTG-GACTTGACATTGTCGATGGTGTCGGAAGACTCC 603142 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || | ||| || || || || || | || || || ||||||||||| ||| Sbjct 603143 ACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 603196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729066828387