Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq8 154 1e-32 >seq8 Length=988098 Score = 154 bits (170), Expect = 1e-32 Identities = 266/379 (70%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 6748 GTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGAT 6807 |||||| || || |||||||| || | || ||| || ||||||||||| ||| | ||| Sbjct 209033 GTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCGCGTTCCACGCGCTCATGATGAT 209092 Query 6808 CCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTC 6866 ||| | ||| | || | ||| | ||||||| |||| | || |||||||| | | Sbjct 209093 CCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGACGT-CGGCGAGCTGGTCGACCC 209151 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 ||| |||| ||||||| ||| || || || ||||| || |||||||| | ||||||| Sbjct 209152 CCTTGCCCGTGTAGTCCGTCTTGGCGTCCACG-TACTCTGCGCCAAAGTGCCGCCACTGG 209210 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGA 6985 || |||||||| ||||| | |||||||||||| || | | ||| | |||| || Sbjct 209211 AAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCCAGGCTGTCGAGG 209270 Query 6986 AAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC--CCGGGACGAGAGCTCCTTGG 7043 || || || ||||||| ||||||| ||||| || || | | ||||| || || Sbjct 209271 AACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTGAGAG--CCCGGG 209328 Query 7044 TGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACAC 7103 || ||| ||| | ||||||||||||||| |||| ||| | | |||| | Sbjct 209329 AGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGCGACGACGGCGCGCAGAAACACCC 209388 Query 7104 GTTTCGTCGTCAGCAGCGG 7122 | ||||| || || ||||| Sbjct 209389 GCTTCGTGGTGAGGAGCGG 209407 Score = 154 bits (170), Expect = 1e-32 Identities = 266/379 (70%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||| || || ||||| || |||| | | ||| |||| ||||||||||||||| Sbjct 209407 CCGCTCCTCACCACGAAGCGGGTGTTTCTGCGCGCCGTCGTCGCCGAGCTGCTGTGGTTC 209348 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGG--GGGGTGAAGATCTGGGACG 34340 | ||| ||| || || || ||||| | | || || ||||| ||||||| Sbjct 209347 ATCGAGGGCAACACCGACTCCCGGG--CTCTCAGCGACGTCGGCGTCAAGATATGGGACG 209290 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACT 34400 ||||||| || || || || |||| | ||| | | || |||||||||||| Sbjct 209289 GCAACGGGTCGCGCGAGTTCCTCGACAGCCTGGGCCTGACGCACCGCGAGGAGGGCGACC 209230 Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 | ||||| |||||||| ||||||||| | |||||||| || ||||| || || || ||| Sbjct 209229 TCGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTTGGCGCAGAGTA-CGTGGACGCCAAG 209171 Query 34461 -CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCG 34518 ||||||| |||| |||| | |||||||| || | |||| ||||||| | ||| Sbjct 209170 ACGGACTACACGGGCAAGGGGGTCGACCAGCTCGCCG-ACGTCATCGACAAGCTCAAGAC 209112 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 | || | ||| | |||||| | ||| ||||||||||| || ||| || | || || Sbjct 209111 CAGGCCGTACGACCGCAGGATCATCATGAGCGCGTGGAACGCGCGGGACCTGCACCTCAT 209052 Query 34579 GGCGCTCCCCCCGTGCCAC 34597 |||||| || || |||||| Sbjct 209051 GGCGCTGCCGCCTTGCCAC 209033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261621144080