Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq31 131 1e-25
seq3 111 1e-19
seq25 89.7 4e-13
>seq31
Length=345369
Score = 131 bits (144), Expect = 1e-25
Identities = 157/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || ||| ||| || || || || || ||||| | ||||||| |||| ||
Sbjct 218288 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCCTC 218229
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| ||||| ||||| ||||||||||||| ||| | | || |||||
Sbjct 218228 GAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCTTG 218169
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| ||| |||| ||| | | | || || |||||| || |||| |||||| |||
Sbjct 218168 AATCTTCGACTTGA-CGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTTT 218110
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||||||||| || || ||||||||||||||
Sbjct 218109 TTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| ||| || ||| || || || || || || ||||| || || || | || ||
Sbjct 217831 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 217772
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
|||||||| || ||||| || | ||||||||||||| || | || ||| |||||
Sbjct 217771 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 217712
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|||||| |||| | | | || || |||||||| || | ||||| | |||
Sbjct 217711 ATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 217652
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || || || || |||||||||||
Sbjct 217651 CCGGTGAGGGTCTTTACGAAGATTTGCAT 217623
>seq3
Length=1259731
Score = 111 bits (122), Expect = 1e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | |||||| || || |||||||| || || || || || ||||| || || || |
Sbjct 602977 GCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 603036
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||| ||||| ||||| || || ||||||||||||| ||| | || ||| ||
Sbjct 603037 ATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTT 603096
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| || |||| | | | || ||| |||||||| || | |||||
Sbjct 603097 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 603156
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || ||||| || || || || || || ||||||||
Sbjct 603157 GGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 603195
>seq25
Length=408197
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156
|| || || || || ||||| || ||||| | || || ||||| ||||| ||||| ||
Sbjct 312413 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 312472
Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216
| |||||||||||||| || | || ||| |||||| ||| || |||| | |
Sbjct 312473 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 312532
Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275
| ||| ||| ||||| || || | |||||| | || |||||||| || || |||||
Sbjct 312533 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 312591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429544872322907
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |