Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq31 113 3e-20
seq3 89.7 3e-13
>seq31
Length=345369
Score = 113 bits (124), Expect = 3e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || || || ||||||||||| ||||| || |||||||| || |
Sbjct 218079 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 218138
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || ||| ||||| ||||| | || || || ||
Sbjct 218139 GACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCAG 218198
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | || ||||||||||| || || || |||| ||| || || | ||| ||||||
Sbjct 218199 CAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAAC 218258
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||||||
Sbjct 218259 ATCCAGAAGGAGTCCAC 218275
Score = 107 bits (118), Expect = 1e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || |||||||| || || || ||||| || || || || || |
Sbjct 217851 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 217910
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | |||| | ||||| || || | ||||| || ||
Sbjct 217911 GACACCATCGACAATGTCAAGGCGAAAA-TCCAAGACAAGGAGGGCATCCCGCCCGACCA 217969
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| || || || ||||| ||||||||||| ||||||| ||||| | | ||| |||||
Sbjct 217970 GCAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAA 218029
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || || ||||| | ||| | |||
Sbjct 218030 CATCCAGAAGGAATCCACCCTCCATCTCGTT 218060
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || || || || || || ||||| ||||| || || || |
Sbjct 218307 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 218366
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | |||||| ||||| || || | || || |||||
Sbjct 218367 GATACCATTGATAATGTGAAGTC-GAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCA 218425
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||| || || || || || || | | || ||| ||| |||||
Sbjct 218426 GCAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAA 218485
Query 23790 CATACAAAAAGAGTCCACATTACA 23813
||| ||||| ||||| || || ||
Sbjct 218486 CATTCAAAAGGAGTCGACGTTGCA 218509
>seq3
Length=1259731
Score = 89.7 bits (98), Expect = 3e-13
Identities = 139/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || ||||||||||| || || ||||| ||||| || || ||
Sbjct 603195 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 603136
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || || ||||| || || | || || ||
Sbjct 603135 TCCGACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 603077
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||||| | || ||||| ||||| || || || || | ||||| | | ||| ||
Sbjct 603076 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTA 603017
Query 23787 CAACATACAAAAAGAG 23802
|||||| || || |||
Sbjct 603016 CAACATCCAGAAGGAG 603001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009027390612
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |