Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq31 156 1e-32 seq3 134 3e-26 seq25 125 2e-23 >seq31 Length=345369 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || ||||| || || |||| ||||| |||||||| ||| Sbjct 218299 CGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTT 218240 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || ||||||||||| || |||||||| ||||| ||| Sbjct 218239 CGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCT 218180 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||| ||| || || ||||||||||| | || || || | | Sbjct 218179 TCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGC 218120 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || ||||||| || || | || | |||||| Sbjct 218119 GTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || ||||| |||||||| || |||| ||||| ||||||| || Sbjct 218071 CGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 218012 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| || || || ||||| ||||| | ||||| ||||||||||| || || Sbjct 218011 CGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCC 217952 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||||||||| || ||| ||| ||||||||||| || | ||||| || | Sbjct 217951 TCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGG 217892 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | || || | ||| | ||||| Sbjct 217891 GTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || |||||||| || |||| ||||| ||||||| || | |||||| Sbjct 217834 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 217775 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || ||||| ||||| | || || ||||||||||| || || ||||||||| Sbjct 217774 TCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 217715 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| ||| ||||| ||||| || | ||||| || | ||||| ||| Sbjct 217714 TGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 217655 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || |||| ||| | |||||| Sbjct 217654 TTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 217623 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| | || || || ||||| | ||||| ||||| | ||||||||||| Sbjct 218518 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 218459 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| ||||| || || || || ||||| || ||||||||| Sbjct 218458 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 218399 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||||||| || ||||| || || | ||||| || | |||||| ||| Sbjct 218398 TGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTC 218339 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| || || | ||| | ||||| Sbjct 218338 TTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307 >seq3 Length=1259731 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| || ||| || || |||| ||||| ||||||| || Sbjct 602972 CGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 603031 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||| ||||| ||||| || |||||||| || || || Sbjct 603032 CGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCC 603091 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 603092 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 603151 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| | || || | ||| | ||||| || Sbjct 603152 GTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 603195 >seq25 Length=408197 Score = 125 bits (138), Expect = 2e-23 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| ||||||| |||| ||||| || |||||||| ||||| ||||| | || || Sbjct 312422 TTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGC 312481 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 |||||||| || || || |||||||| |||||||| ||| ||| ||||| ||||| Sbjct 312482 TGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCG 312541 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 |||| || || || | |||||| ||||||||||||| Sbjct 312542 GAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCA 312578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529076176466