Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq31 156 1e-32
seq3 134 3e-26
seq25 125 2e-23
>seq31
Length=345369
Score = 156 bits (172), Expect = 1e-32
Identities = 167/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || ||||| || ||||| || || |||| ||||| |||||||| |||
Sbjct 218299 CGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTT 218240
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || |||||||| || || ||||||||||| || |||||||| ||||| |||
Sbjct 218239 CGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCT 218180
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||| ||||| ||| || || ||||||||||| | || || || | |
Sbjct 218179 TCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGC 218120
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || ||||||| || || | || | ||||||
Sbjct 218119 GTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079
Score = 138 bits (152), Expect = 3e-27
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || || ||||| |||||||| || |||| ||||| ||||||| ||
Sbjct 218071 CGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 218012
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || ||||| || || || ||||| ||||| | ||||| ||||||||||| || ||
Sbjct 218011 CGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCC 217952
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||||||||| || ||| ||| ||||||||||| || | ||||| || |
Sbjct 217951 TCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGG 217892
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || || | || || | ||| | |||||
Sbjct 217891 GTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || || || || |||||||| || |||| ||||| ||||||| || | ||||||
Sbjct 217834 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 217775
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || ||||| ||||| | || || ||||||||||| || || |||||||||
Sbjct 217774 TCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 217715
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| || || ||| ||| ||||| ||||| || | ||||| || | ||||| |||
Sbjct 217714 TGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 217655
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || |||| ||| | ||||||
Sbjct 217654 TTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 217623
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| | || || || ||||| | ||||| ||||| | |||||||||||
Sbjct 218518 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 218459
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| ||||| || || || || ||||| || |||||||||
Sbjct 218458 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 218399
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| || || ||||||| || ||||| || || | ||||| || | |||||| |||
Sbjct 218398 TGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTC 218339
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||| || || | ||| | |||||
Sbjct 218338 TTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307
>seq3
Length=1259731
Score = 134 bits (148), Expect = 3e-26
Identities = 164/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || | ||| || ||| || || |||| ||||| ||||||| ||
Sbjct 602972 CGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 603031
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || |||||||| ||||| ||||| ||||| || |||||||| || || ||
Sbjct 603032 CGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCC 603091
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 603092 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 603151
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| ||||| ||||| | || || | ||| | ||||| ||
Sbjct 603152 GTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 603195
>seq25
Length=408197
Score = 125 bits (138), Expect = 2e-23
Identities = 122/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594
||||| ||||||| |||| ||||| || |||||||| ||||| ||||| | || ||
Sbjct 312422 TTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGC 312481
Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654
|||||||| || || || |||||||| |||||||| ||| ||| ||||| |||||
Sbjct 312482 TGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCG 312541
Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691
|||| || || || | |||||| |||||||||||||
Sbjct 312542 GAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCA 312578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192529076176466
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |