Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq8 105 5e-18
seq36 91.5 1e-13
>seq8
Length=988098
Score = 105 bits (116), Expect = 5e-18
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
|| |||| ||||||||| ||||| || || || ||||| ||||| || | |||| | |
Sbjct 209196 AAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGG 209255
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCT 30134
||| |||| | || || | || |||||| ||||||| ||||| || || | ||
Sbjct 209256 CCCAGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCG 209315
Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACG 30193
| |||||| | ||||| ||| ||||| || ||||||||||||||| | ||||||
Sbjct 209316 CTGAGAGCCCG--GGAGTCGGTGTTGCCCTC-GATGAACCACAGCAGCTCGGCGACGACG 209372
Query 30194 GCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228
|| | ||| |||| ||| || |||||||| ||
Sbjct 209373 GCGCGCAGAAACACCCGCTTCGTGGTGAGGAGCGG 209407
>seq36
Length=277325
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/181 (73%), Gaps = 8/181 (4%)
Strand=Plus/Minus
Query 53494 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-CT 53552
||||||||| || | |||| ||| | ||| |||| |||||||||||||| || |
Sbjct 33616 CGTCAAGGTCCGGGTTCGGACAACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCTCG 33557
Query 53553 TCACGGCGCAAAAGGGGACATGCGGAGCG--GTCCTGACTCAGGAGGACATGCCCTTCGA 53610
|||||| |||||||| || || | | || | | | |||||||||||||||| |
Sbjct 33556 TCACGGA-CAAAAGGGCACGATTGGTGTGACGTACCGGC--AGGAGGACATGCCCTTT-A 33501
Query 53611 CAAGG-ACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 53669
|| || | ||||| ||| ||| ||||||||||||| |||||| |||| || | ||||
Sbjct 33500 CACGGGAAGGGGTCACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGA 33441
Query 53670 C 53670
|
Sbjct 33440 C 33440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406162511934154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |