Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 156 6e-33 seq32 111 2e-19 >seq1 Length=1559860 Score = 156 bits (172), Expect = 6e-33 Identities = 456/699 (65%), Gaps = 10/699 (1%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 ||||||||||| || |||||||| | | |||||| |||| | || || || ||||| Sbjct 378751 CCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 378810 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 ||||| || || ||||| || |||| || || || || | | ||| || || || Sbjct 378811 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 378870 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 |||||| | ||||| || || || | | ||| | ||||| || || || || || Sbjct 378871 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 378930 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | || ||||| || || || || || || | |||||||| ||||| || | Sbjct 378931 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 378990 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 |||| || ||| |||| | ||||| || || || || || || | ||| || ||| Sbjct 378991 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 379050 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 | || ||||| | | | || || || || ||||| ||||| || | ||| Sbjct 379051 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 379110 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 ||| || | || |||||||| ||||| || ||||| ||| |||||| | || || Sbjct 379111 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 379170 Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434 || || | ||| ||| || || || || || | || || || || || || Sbjct 379171 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 379230 Query 78435 AACCATTTTTCAGAAAGTAGATTGTATGTTTC----AATAGCTGATTCTATGTC-CCATT 78489 || |||| || | || ||||| ||||| | ||| | | | |||| || Sbjct 379231 AAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGT-TGTCTCCCCA 379289 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 |||| || || || |||||||| | ||| |||||||||| ||| || |||| | Sbjct 379290 GATG----CCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGT 379345 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 | |||| | || ||| |||| || || |||||||| || | || |||| Sbjct 379346 CCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGT 379405 Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGT 78648 |||||||||||| ||| |||| | || | ||||||| Sbjct 379406 CTCTCTCGTAAACAATGGCAGAGTCGAGCTCCTCTTTGT 379444 >seq32 Length=314566 Score = 111 bits (122), Expect = 2e-19 Identities = 285/434 (66%), Gaps = 0/434 (0%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || || |||||||| || || ||||| ||||| || || ||||| ||| || ||||| Sbjct 224960 TTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTC 225019 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 |||||||||||||| ||||| ||| || || | |||| | || | | | | Sbjct 225020 TCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGAGAGCAACCAAC 225079 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 || | || ||||||||||| || ||| ||||||| | | ||||| || | ||| Sbjct 225080 AGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGAAGA 225139 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 || ||||||||||| || || ||||| || || ||||| ||||| || || Sbjct 225140 GCGCACGGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGATGATT 225199 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 | | ||| || |||| | | | | ||| || | |||||||| Sbjct 225200 TCTTGGATGATTTGCTTGCTTGCTCTTTGCTTGAGATGAGAGTGCAGCAGGCATGCAAAG 225259 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 || || | ||| || || | || | |||||| || || || || |||||||| Sbjct 225260 TCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGGCATG 225319 Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269 || || || || ||||||||||| || | |||||| | ||| ||||| ||||| || Sbjct 225320 AGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATGCCCTCG 225379 Query 48270 ACGGCCGCAAATGC 48283 || || || || || Sbjct 225380 ACAGCGGCGAAGGC 225393 Score = 105 bits (116), Expect = 9e-18 Identities = 187/271 (69%), Gaps = 5/271 (2%) Strand=Plus/Plus Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483 ||||| |||| | ||||| || ||||| || || ||||| || ||||| ||||| | Sbjct 225605 AAAGA--ATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAAC 225662 Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543 ||||| | | ||| ||||| | || || ||| ||| || || || || || | Sbjct 225663 GGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATGC 225722 Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603 |||| |||||||| ||||| || | || ||| ||||| ||||| | | ||| Sbjct 225723 CATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATCGTCGTTCA 225782 Query 48604 GT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATG 48660 | ||||||||||| | | ||| || || | |||| ||||| |||||||| || | Sbjct 225783 GGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAAAG 225842 Query 48661 ATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||| || || || ||||| | |||||| Sbjct 225843 AAGCCTCAGCCTTCTTGTACATTTGCCATAT 225873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667593012960