Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1 156 6e-33
seq32 111 2e-19
>seq1
Length=1559860
Score = 156 bits (172), Expect = 6e-33
Identities = 456/699 (65%), Gaps = 10/699 (1%)
Strand=Plus/Plus
Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014
||||||||||| || |||||||| | | |||||| |||| | || || || |||||
Sbjct 378751 CCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 378810
Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074
||||| || || ||||| || |||| || || || || | | ||| || || ||
Sbjct 378811 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 378870
Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134
|||||| | ||||| || || || | | ||| | ||||| || || || || ||
Sbjct 378871 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 378930
Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194
|| | | || ||||| || || || || || || | |||||||| ||||| || |
Sbjct 378931 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 378990
Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254
|||| || ||| |||| | ||||| || || || || || || | ||| || |||
Sbjct 378991 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 379050
Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314
| || ||||| | | | || || || || ||||| ||||| || | |||
Sbjct 379051 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 379110
Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374
||| || | || |||||||| ||||| || ||||| ||| |||||| | || ||
Sbjct 379111 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 379170
Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434
|| || | ||| ||| || || || || || | || || || || || ||
Sbjct 379171 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 379230
Query 78435 AACCATTTTTCAGAAAGTAGATTGTATGTTTC----AATAGCTGATTCTATGTC-CCATT 78489
|| |||| || | || ||||| ||||| | ||| | | | |||| ||
Sbjct 379231 AAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGT-TGTCTCCCCA 379289
Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549
|||| || || || |||||||| | ||| |||||||||| ||| || |||| |
Sbjct 379290 GATG----CCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGT 379345
Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609
| |||| | || ||| |||| || || |||||||| || | || ||||
Sbjct 379346 CCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGT 379405
Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGT 78648
|||||||||||| ||| |||| | || | |||||||
Sbjct 379406 CTCTCTCGTAAACAATGGCAGAGTCGAGCTCCTCTTTGT 379444
>seq32
Length=314566
Score = 111 bits (122), Expect = 2e-19
Identities = 285/434 (66%), Gaps = 0/434 (0%)
Strand=Plus/Plus
Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909
|| || |||||||| || || ||||| ||||| || || ||||| ||| || |||||
Sbjct 224960 TTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTC 225019
Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969
|||||||||||||| ||||| ||| || || | |||| | || | | | |
Sbjct 225020 TCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGAGAGCAACCAAC 225079
Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029
|| | || ||||||||||| || ||| ||||||| | | ||||| || | |||
Sbjct 225080 AGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGAAGA 225139
Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089
|| ||||||||||| || || ||||| || || ||||| ||||| || ||
Sbjct 225140 GCGCACGGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGATGATT 225199
Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149
| | ||| || |||| | | | | ||| || | ||||||||
Sbjct 225200 TCTTGGATGATTTGCTTGCTTGCTCTTTGCTTGAGATGAGAGTGCAGCAGGCATGCAAAG 225259
Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209
|| || | ||| || || | || | |||||| || || || || ||||||||
Sbjct 225260 TCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGGCATG 225319
Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269
|| || || || ||||||||||| || | |||||| | ||| ||||| ||||| ||
Sbjct 225320 AGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATGCCCTCG 225379
Query 48270 ACGGCCGCAAATGC 48283
|| || || || ||
Sbjct 225380 ACAGCGGCGAAGGC 225393
Score = 105 bits (116), Expect = 9e-18
Identities = 187/271 (69%), Gaps = 5/271 (2%)
Strand=Plus/Plus
Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483
||||| |||| | ||||| || ||||| || || ||||| || ||||| ||||| |
Sbjct 225605 AAAGA--ATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAAC 225662
Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543
||||| | | ||| ||||| | || || ||| ||| || || || || || |
Sbjct 225663 GGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATGC 225722
Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603
|||| |||||||| ||||| || | || ||| ||||| ||||| | | |||
Sbjct 225723 CATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATCGTCGTTCA 225782
Query 48604 GT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATG 48660
| ||||||||||| | | ||| || || | |||| ||||| |||||||| || |
Sbjct 225783 GGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAAAG 225842
Query 48661 ATGCCTCTGCTTTTTTATACATATTCCATAT 48691
| ||||| || || || ||||| | ||||||
Sbjct 225843 AAGCCTCAGCCTTCTTGTACATTTGCCATAT 225873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694667593012960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |