Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 172 8e-38 seq32 125 1e-23 >seq1 Length=1559860 Score = 172 bits (190), Expect = 8e-38 Identities = 445/677 (66%), Gaps = 12/677 (2%) Strand=Plus/Plus Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 ||||| ||||| || || ||||| | | ||| || |||| | || || || ||||| Sbjct 378751 CCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 378810 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 ||||| || || ||||| || |||| || || || || | | ||| || || || Sbjct 378811 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 378870 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 |||||| | ||||| ||||| || | | ||| | ||||| || || || || || Sbjct 378871 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 378930 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | |||||||| || || || || || || | |||||||||||||| || | Sbjct 378931 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 378990 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 |||| || ||| |||| | |||||| || || || || || || | ||| || ||| Sbjct 378991 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 379050 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 |||||||| | ||||| || || || ||||||||||| || | || Sbjct 379051 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 379110 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 || || | ||||| ||||||||||| || || || ||| |||||| | || || Sbjct 379111 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 379170 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 || || | ||| ||| || || || || || | ||||| || || || ||| Sbjct 379171 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 379230 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATAT------CCCAT 77083 || |||| || | || ||||| ||||| | || || || | |||| Sbjct 379231 AAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCA- 379289 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143 |||| || ||||| |||||||| | ||| |||||||||||||| ||| |||| Sbjct 379290 -GATG----CCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCG 379344 Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203 | | |||| | || ||| |||| || || |||||||| || | || ||| Sbjct 379345 TCCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAG 379404 Query 77204 TCTCTTTCGTAAATAAT 77220 ||||| ||||||| ||| Sbjct 379405 TCTCTCTCGTAAACAAT 379421 >seq32 Length=314566 Score = 125 bits (138), Expect = 1e-23 Identities = 204/293 (70%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 || || | ||| || || || || | | |||| | || ||||| || || || || Sbjct 225581 TCCTTGATATACGTGTCGATCAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATG 225640 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 ||||| || ||||| ||||| | ||||||| || ||| ||||| | || || ||| Sbjct 225641 ATCTGGAACCCGTAGAAACAACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCA 225700 Query 47011 GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070 || || || || || || ||||| |||||||| |||||||| | || ||| Sbjct 225701 ACCAGGTTTTCGTTGACGATGCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATG 225760 Query 47071 AAATATTTTTCATCGGTAGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCT 47127 ||||| ||||||||| |||| ||||||||||| | | ||| || || | ||| Sbjct 225761 AAATACTTTTCATCGTCGTTCAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCT 225820 Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 | ||||| ||||||||||| || ||||| || || || ||||| | |||||| Sbjct 225821 ATCTCTTCGGCTGTCCAGAAAGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 225873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933161276480