Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq31 125 2e-23
seq3 100 7e-16
>seq31
Length=345369
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || |||||||| || || || || ||||||||||| ||||| | || | ||||||
Sbjct 217834 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 217775
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| || || ||||| | | ||||||||| | || ||| || ||||| |||
Sbjct 217774 TCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 217715
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|||||||| |||||| | || | |||| ||| ||| || || || || || ||
Sbjct 217714 TGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 217655
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||| ||||||| |||||
Sbjct 217654 TTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 217623
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || || || || ||||| || ||||||||||| ||||| || |||| || ||
Sbjct 218290 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCC 218231
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||| |||||||| | ||||||||| | | || |||||||| |||
Sbjct 218230 TCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCT 218171
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || ||||| | || | | ||||||| ||| ||||| || || || |||
Sbjct 218170 TGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTT 218111
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || ||||| || |||| |||||
Sbjct 218110 TTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079
Score = 120 bits (132), Expect = 7e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| || || || || || ||||||||||| ||||| | || | || |||
Sbjct 218062 AGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCT 218003
Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || ||| || || ||||| |||| | |||||||| | || ||| || ||||| ||
Sbjct 218002 TCGAGTTGTTTGCCAGCAAAGATCAAGCGT-TGCTGGTCGGGCGGGATGCCCTCCTTGTC 217944
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||| ||||| |||||| | || | | |||| ||| ||| || || || || || ||
Sbjct 217943 TTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGT 217884
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||| ||||||| ||||||
Sbjct 217883 CTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || || || | || ||||| ||||| |||||||| ||||||| |||||||||||
Sbjct 218519 GAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATC 218460
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || ||||| || | |||||| || | | || || ||||| ||
Sbjct 218459 CTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 218400
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||||||| || ||| | || | | | || || ||| || || || || || ||
Sbjct 218399 TTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGT 218340
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || ||||| ||||| | ||||||
Sbjct 218339 CTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307
>seq3
Length=1259731
Score = 100 bits (110), Expect = 7e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972
||| || ||||||||||| ||||| | || | ||||| || || || || || ||
Sbjct 603001 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 603060
Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032
||| || | ||||||||| | | ||| || ||||| || || || || |||||| |
Sbjct 603061 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 603120
Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092
|| | | |||| ||| ||| || || || || || || || |||||||| ||||| ||
Sbjct 603121 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGAC 603180
Query 152093 GAAGACCTGCATTTTACC 152110
||| | |||||| || ||
Sbjct 603181 GAAAATCTGCATCTTGCC 603198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153818745117269
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |