Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq3 147 2e-30
seq31 140 2e-28
seq25 122 6e-23
>seq3
Length=1259731
Score = 147 bits (162), Expect = 2e-30
Identities = 171/229 (75%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || ||||| ||| || ||||||||||| ||||||||||| |||||
Sbjct 602966 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 603025
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| | || || |||||||| || |||||||| | |||||||| || | ||
Sbjct 603026 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 603085
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| || ||||| ||| ||||| ||| || ||| | |||||||||| || ||||
Sbjct 603086 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 603143
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| | || || ||||| |||||||||||||| ||||| || |||||
Sbjct 603144 CCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192
>seq31
Length=345369
Score = 140 bits (154), Expect = 2e-28
Identities = 170/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||||||||| || ||| |||||| ||||||||||| ||
Sbjct 218309 CATGCCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 218250
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
||| | | || |||| || |||||||| ||||||||||| | |||||||| || |
Sbjct 218249 GGCCAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGG 218190
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | |||||||| || |||||| ||| | | | |||||||| | || ||
Sbjct 218189 GGGAATCCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTC 218130
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| |||| ||| || || |||||||| || ||||| || ||||||||||||
Sbjct 218129 AACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCATG 218078
Score = 134 bits (148), Expect = 1e-26
Identities = 158/212 (75%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||| ||||| ||| ||||| ||||||||||| ||||| || ||| | || ||
Sbjct 217831 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 217772
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
||||| || || ||||||||||| |||||||| || | || | || ||||| ||
Sbjct 217771 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 217712
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|| ||| ||| || ||| | || ||||| | || |||||||| | || || ||||
Sbjct 217711 ATTTTCGACTTGACATTGT--CGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCT 217654
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|||| ||||||||||| |||||||||||||||
Sbjct 217653 TTCCGGTGAGGGTCTTTACGAAGATTTGCATG 217622
Score = 127 bits (140), Expect = 1e-24
Identities = 171/236 (72%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | ||| | || || || || || ||| ||||| |||||||||||
Sbjct 218084 TTGCATGCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTA 218025
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
||||| || ||| |||| || || || || || ||||||||||| || ||||| ||
Sbjct 218024 GTCGGCCAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTC 217965
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281
| || | || ||||| || || ||| ||| || ||| | ||||||||||
Sbjct 217964 GGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGT--CGATGGTGTCGGAA 217907
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| |||||||||| || || ||||| || ||||||||||| |||||||| |||||
Sbjct 217906 GACTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851
Score = 120 bits (132), Expect = 2e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||||||| | ||| ||||||||| |||||||| ||||| || | | | || ||
Sbjct 218516 CACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTC 218457
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || |||||||| | ||||||||||| | ||| | || ||||| ||
Sbjct 218456 AAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTG 218397
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|| ||| ||||| | | ||||| || | || |||||||| | ||| || |||||
Sbjct 218396 AATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTT 218337
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || || ||||| ||||| || ||||||
Sbjct 218336 CCCGGTCAGCGTCTTGACGAAAATCTGCATG 218306
>seq25
Length=408197
Score = 122 bits (134), Expect = 6e-23
Identities = 138/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| || |||||||| ||||| || || | || ||||||||||| || |||||||
Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||||||||||||| || | ||| | || ||||| ||| ||||| ||| || |||
Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 312530
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||||| ||| || ||||| | ||| || ||||| ||||| |||||||||||
Sbjct 312531 --CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 312588
Query 44326 GAA 44328
||
Sbjct 312589 AAA 312591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359989790153763
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |