Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 167 2e-36 seq31 150 2e-31 seq25 105 6e-18 >seq3 Length=1259731 Score = 167 bits (184), Expect = 2e-36 Identities = 179/235 (76%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||| ||||| || || | ||||| ||||| |||||||||||||| ||||| |||||| Sbjct 602963 CCGCCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 603022 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | |||||||| | || |||||||||||||| || || || || ||||| ||||| | | Sbjct 603023 GCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGG 603082 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || |||||||||| ||| || ||| || | || | |||||| |||| Sbjct 603083 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACT 603140 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| | || || || || ||||| || ||||| |||||||||||||| || Sbjct 603141 CCACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 603195 >seq31 Length=345369 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | |||||| ||||| ||| ||||||||| ||||| ||||||| Sbjct 218306 GCCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 218247 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || |||| ||||||||||||||||| || || || ||||| ||||| | ||| Sbjct 218246 CAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGG 218187 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||| | ||| | || | | ||| | | | ||||| |||||| | Sbjct 218186 AATCCCTTCCTTGT-CTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAA 218128 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| || ||||| |||||||| ||||| || || || |||||| Sbjct 218127 CTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCATG 218078 Score = 136 bits (150), Expect = 4e-27 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| |||| ||| |||||| |||||||| ||||||| Sbjct 218534 GCCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGC 218475 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | | || || |||||||| || || || || || ||||| || || | || Sbjct 218474 TAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGG 218415 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGACGACACAGTGTCGCTCGACTCC 41812 || || ||||||||| ||| |||| | ||||| | | | | || || ||||||| Sbjct 218414 AATGCCCTCCTTGTCT-TGAATTTTCGACTTCACATTATCA-ATGGTATCAGACGACTCC 218357 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | ||| || || || || ||||||||||| ||||||||||||||| Sbjct 218356 ACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 218306 Score = 134 bits (148), Expect = 1e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | || ||||| || ||| |||||||| ||||| ||||||| Sbjct 218078 GCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 218019 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| ||||| || ||||| || || |||| ||| || ||||| | || Sbjct 218018 CAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGG 217959 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| |||||| ||| || | ||| |||||| |||||| Sbjct 217958 GATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATG--GTGTCGGAAGACTCC 217901 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || ||||| ||||| |||||||| Sbjct 217900 ACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851 Score = 129 bits (142), Expect = 5e-25 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | |||||||| || ||| |||||||| ||||| ||||||| Sbjct 217849 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 217790 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||| || || || || |||| |||||| ||||| | || Sbjct 217789 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 217730 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| |||| | ||| || | ||| | ||||| |||||| Sbjct 217729 ATGCCCTCCTTGTCT-TGAATTTTCGACTTGACATTGTCGATA--GTGTCAGAAGACTCC 217673 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || || || ||||||||||| || |||||| Sbjct 217672 ACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 217622 >seq25 Length=408197 Score = 105 bits (116), Expect = 6e-18 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| ||||||| ||||| || | || || ||||||||||| || || | Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| ||||| | || | || |||||||||| ||| || ||| || | Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 312530 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| ||||| ||||| | ||| || || || |||||||| ||||| || Sbjct 312531 CG--ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 312588 Query 41851 GAAA 41854 ||| Sbjct 312589 AAAA 312592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303196746800