Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-24 seq5 116 2e-21 seq4 104 2e-17 >seq2 Length=4895233 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||| ||||| | || || || ||||| |||||||||||||| Sbjct 4675595 CCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 4675536 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || || |||||||||||| ||| Sbjct 4675535 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 4675476 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 4675475 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACC 4675416 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || ||||| || || || ||||||||||| Sbjct 4675415 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 4675369 >seq5 Length=3440085 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| || ||||| |||||||||||||| || ||| |||| Sbjct 3138038 AGAACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 3137979 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || || ||||||||||| ||| | || ||||||||| Sbjct 3137978 TCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 3137919 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || ||||| || | |||||||| Sbjct 3137918 TGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 3137859 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || ||||| ||||| Sbjct 3137858 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 3137827 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | ||||||| ||| | ||| || ||||| ||||||||||| || Sbjct 3138282 TCCACCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 3138223 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 |||| ||| | || ||||||||||| || ||||| ||||| ||||||||||| || Sbjct 3138222 CAGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGG 3138163 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | | || | || | || || || Sbjct 3138162 GATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 3138103 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || || || || | || || || ||||||||||| Sbjct 3138102 CTCCAGTGTTATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 3138055 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | || || ||||| |||||||||||||| Sbjct 3137825 CCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3137766 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || | ||||||||||| || Sbjct 3137765 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGG 3137706 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | || | || || || Sbjct 3137705 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCCACC 3137646 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || ||||| ||||||||||| Sbjct 3137645 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3137599 >seq4 Length=3484069 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||||||||| ||| | || || | ||||||||| ||||| || Sbjct 949905 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 949846 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 | ||||||||||| ||| | || ||||||||| ||||| ||| | || | | Sbjct 949845 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 949786 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | |||| || ||||| || | |||||||| ||||| || || || ||||| ||| Sbjct 949785 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 949726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070610083680