Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 331 8e-86 seq1 134 1e-26 seq5 100 3e-16 seq2 86.0 6e-12 >seq3 Length=3828249 Score = 331 bits (366), Expect = 8e-86 Identities = 1218/1889 (64%), Gaps = 40/1889 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| |||| ||| |||| | ||||| || || |||||||| Sbjct 3340888 CTGGTCGACAGTGAACTGAATGGGCGCTGCCGCCGCCTGAGTGCGGAGGTAGTACATGCC 3340947 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 || || ||||||| |||||| || || || || || | || || | | || Sbjct 3340948 AGTTTTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGTGGG 3341007 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | |||| ||||| ||| ||||| || || || || || || | Sbjct 3341008 CTCACGCATGTGGATGTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGCAGA 3341067 Query 22285 CATATTTATCAAT-GTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| | | |||| || | | || | |||||| ||||||||||||| | |||| | Sbjct 3341068 CATCTGCA-CAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGATAT 3341126 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | ||| || ||| |||||| || || | | | || || || || | Sbjct 3341127 CGGCCGGGATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTTCA 3341186 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | || ||||| ||| || | |||| || ||| || |||| || || | Sbjct 3341187 TAGCCTCAGACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACGACCT 3341246 Query 22464 GAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 | |||||||| | |||| || || || ||||| ||||| || ||| | || ||||| | Sbjct 3341247 GGAACTCGCCAG-CAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCAC 3341305 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| ||||| | || || ||||| ||||| || |||| || | | Sbjct 3341306 TCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCTG 3341365 Query 22583 TTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGG 22640 |||| | ||||||| |||| ||| || |||||| ||||||||| ||||| | Sbjct 3341366 TTTCGGATACCGTGCTCCTTGATCTTTGCCTTCAAAGCATC--CCAGTCCCAGAGATCAG 3341423 Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGCC 22698 | ||| || | ||||||| || ||||| | | || |||| || | | | || Sbjct 3341424 AAGGCTGGAC---GCCCCACATGTCATATTGAAGCTGTCCCTGCGAGACGG-GAGATCCC 3341479 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 | |||| || | ||| || || | | | ||| | ||||| ||| ||| || | Sbjct 3341480 T-CGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCAGC 3341538 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GC----GGCGACGCTTTCG 22813 | || || ||||||||||| | ||||||| | |||| || || ||| || Sbjct 3341539 ATGGTAGATGGTCTCGAAGATCTGTTTGTTCAGCT-GGCGAGCCTCAGGGGAC----TCA 3341593 Query 22814 TACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGT 22873 | ||||| || | || ||| || || || | |||||| || || | ||| || || Sbjct 3341594 AAAGGCATGCGGAGAGCCAAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGC 3341653 Query 22874 CGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTT 22933 | || | || || | |||||| || || || || ||| || | Sbjct 3341654 CTGTGTCGCATGTTGCTGTTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATC 3341713 Query 22934 CTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG 22993 |||||||||| | || | | || | | |||| ||| | Sbjct 3341714 TTGTTCAAGTTGCGAACAACGACCTGGGTGACCTCGTGGAGATGCTGGAAGTTGTAGCAG 3341773 Query 22994 CCCGATT-GTA--CAACAAACTTGTTGACGGCG--ATCGAGGCAAGATTGCATACGGCCA 23048 || ||| ||||| | || || | | | || ||||| || ||||| || |||| Sbjct 3341774 TTGTTTTCGTAGTCAACATA--TGCTGGCAGAGCAATGGAGGCCAGGTTGCAGACAGCCA 3341831 Query 23049 CCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGC 23108 |||| || | |||||| | || ||||| || || ||| | || || | Sbjct 3341832 CCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGTTC 3341891 Query 23109 CCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGC 23168 ||| || |||||||||| || || ||||| | |||||||||||||||| | || ||| Sbjct 3341892 CCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGC 3341951 Query 23169 CCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCA 23228 | |||||| ||| | ||||| ||| || ||||| ||||||| | | ||| Sbjct 3341952 CGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTCATG-GTCTTG 3342010 Query 23229 CGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG 23287 || | | ||||||| ||||||||| | ||||| || || || ||| ||||||| || Sbjct 3342011 CGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGCAT 3342070 Query 23288 TCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACG 23347 || || |||||||| | | | || |||||||| |||| || || ||||| Sbjct 3342071 TCAGCAAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACC 3342130 Query 23348 CGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCC 23407 || |||| || || || || ||||| || || ||| || |||||||| || |||||| Sbjct 3342131 CGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGGACCTCC 3342190 Query 23408 TCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCG 23467 || || ||| ||||||| |||||| | || || || || || || ||||| ||||| Sbjct 3342191 TCCTTACCGTGGTTCTTTCGCAAATCGAGGAACTCAAAGACATCAGCGTGCCATGGCTCC 3342250 Query 23468 AGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTG 23527 ||||| | || || || || || | ||| || || ||||| || ||||||||||| ||| Sbjct 3342251 AGGTAGATAGCGAAAGCACCAGGACGCTTGTTACCACCCTGGTCAACGTAACGGGCAGTG 3342310 Query 23528 TTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACA 23587 |||||| | || | ||||| || | || ||| || |||| |||| || || | | Sbjct 3342311 TTGTTGAAGACACGAAGCATGGGAATGATACCATTTGACGTGCCGTTGGTACCGGCTATA 3342370 Query 23588 CTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGAT 23647 || || | || || | || |||| | ||| || |||||| || || || Sbjct 3342371 TAAGAGCCAGTGGCGCGGATACGATGGACGTTCAGACCAATACCTCCGGCCATCTTGGAG 3342430 Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707 ||||| |||||| || ||||| |||||||| ||||| |||||||| || || | || Sbjct 3342431 ATCATGGCGCATGTCTTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCG 3342490 Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 || | ||| || || |||| || | | ||| ||| | || |||||| || || Sbjct 3342491 ACGAGGAAGCATGACGACAGCTGAGGCTGGGGTGTACCAGCGTTGAACAGCGTAGGCGAT 3342550 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 ||||| || || || | |||||| || ||||| || || || | || || || Sbjct 3342551 GCGTGTGTGAAAAATTTGTGCGACATCAGGTTGTAAGTCTCAATCACTCTCTCGATATCA 3342610 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC- 23886 ||||| ||||| | || || ||||| ||||||| || || | ||||| ||| Sbjct 3342611 TCTCCCCAGATACCAACAGCAACACGCATGATCATGTGCTGTGGCCGTTCGAC---GACT 3342667 Query 23887 --GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAG 23944 ||| | | |||| || ||||| || | || || || || || || || | ||| Sbjct 3342668 TTGCCATCGAGCTTGAGGAGGTATGACCGCTCCAAGGTCTTGAAGCCGAAGTATTGGTAG 3342727 Query 23945 TTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||||| || || | || |||||||| Sbjct 3342728 CCGAAGTCTCGGTCATATACAATGGCCGA 3342756 >seq1 Length=5395810 Score = 134 bits (148), Expect = 1e-26 Identities = 329/489 (67%), Gaps = 20/489 (4%) Strand=Plus/Minus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG--CCACGTTCGCCGAGA 57972 |||||||| || ||| | | || ||||| | | ||||| |||| | |||| || Sbjct 863762 AAGAAGGCCGACTGGGCCCTGAAGTGGATCAC--GGACCACGAGTCCACCTACGCCCAGC 863705 Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATA 58031 | || | || ||||| || || || ||||| ||||| || ||||| || | || Sbjct 863704 GTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGT-GCTTTCGCCTCCATC 863646 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || ||| ||||||| ||||| |||||||| |||||||| || ||||||| |||| || Sbjct 863645 TTCTGGCTGAAGAAGCGCGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCT 863586 Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA 58151 || ||||||||||| || || || || || ||||| ||| ||||||| | | || Sbjct 863585 CGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCTCACCT----GAGGAA 863530 Query 58152 CCGACGC----GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGA 58207 ||| | | || ||| || | | || ||||| || || ||||| || || || || Sbjct 863529 CCGCCCCAGCAAGGCGCGCGTCGAGAAGATCATCACTGATGCCGTCGCCATTGAGAAGGA 863470 Query 58208 GTTTGTCACCGAAGC-CCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAA 58266 ||| | || || || | | || | | | ||||||| |||||| | ||||| Sbjct 863469 GTTCCTGACTGAGGCTCTTCCCTGCAGTC-TGCTCGGCATGAACGCCAACCTGATGAAGC 863411 Query 58267 AGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTA 58324 ||||||| ||||| || |||||| | || | ||| || | |||| ||| || Sbjct 863410 AGTACATCGAGTTCGTGGCCGACCGTCTCCTCGTCGCCCTTGGCAACGAGAAGGTC--TA 863353 Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384 ||| | | || || || || || ||| | ||||| || | |||||||| ||||| Sbjct 863352 CAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTT 863293 Query 58385 TTTCGAAAA 58393 ||||| || Sbjct 863292 CTTCGAGAA 863284 >seq5 Length=3440085 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 3137598 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTC 3137657 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| | || ||||||||| || | || || ||||| Sbjct 3137658 TGACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCA 3137717 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || ||||||||||| ||| | || ||| || | ||| || || Sbjct 3137718 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAA 3137777 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || ||||| || || || | || | ||||||| Sbjct 3137778 CATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTCCGTGGCGGTA 3137827 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || ||||| | || || || | ||| Sbjct 3137827 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 3137886 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 3137887 GACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 3137946 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || || || ||| | || ||| || | ||| || ||| Sbjct 3137947 CAGCGCCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 3138006 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || |||| || Sbjct 3138007 ATCCAGAAGGAGTCTACTCTCCACTTGGTTCT 3138038 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || ||||| || | || || || | || Sbjct 3138055 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATAACACTGGAGGTGGAGTCCTCG 3138114 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| || | || || |||||| Sbjct 3138115 GACACCATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 3138174 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || |||||||| || ||||||||||| Sbjct 3138175 CAGCGTCTCATCTTCGCTGGAAAGCAGTTGGAAGA 3138209 >seq2 Length=4895233 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| | || || || | || Sbjct 4675368 CATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGTCCTC 4675427 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || |||||||| Sbjct 4675428 GGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCA 4675487 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| || || ||||| ||||| ||| | || ||| Sbjct 4675488 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 4675524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764433055760