Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20]
353 sequences; 44,725,953 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3 331 8e-86
seq1 134 1e-26
seq5 100 3e-16
seq2 86.0 6e-12
>seq3
Length=3828249
Score = 331 bits (366), Expect = 8e-86
Identities = 1218/1889 (64%), Gaps = 40/1889 (2%)
Strand=Plus/Plus
Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164
|| ||| || || ||||| |||| ||| |||| | ||||| || || ||||||||
Sbjct 3340888 CTGGTCGACAGTGAACTGAATGGGCGCTGCCGCCGCCTGAGTGCGGAGGTAGTACATGCC 3340947
Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224
|| || ||||||| |||||| || || || || || | || || | | ||
Sbjct 3340948 AGTTTTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGTGGG 3341007
Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284
| ||||| | |||| ||||| ||| ||||| || || || || || || |
Sbjct 3341008 CTCACGCATGTGGATGTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGCAGA 3341067
Query 22285 CATATTTATCAAT-GTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343
||| | | |||| || | | || | |||||| ||||||||||||| | |||| |
Sbjct 3341068 CATCTGCA-CAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGATAT 3341126
Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403
| ||| || ||| |||||| || || | | | || || || || |
Sbjct 3341127 CGGCCGGGATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTTCA 3341186
Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463
| | || ||||| ||| || | |||| || ||| || |||| || || |
Sbjct 3341187 TAGCCTCAGACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACGACCT 3341246
Query 22464 GAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522
| |||||||| | |||| || || || ||||| ||||| || ||| | || ||||| |
Sbjct 3341247 GGAACTCGCCAG-CAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCAC 3341305
Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582
|| ||||| ||||| ||||| | || || ||||| ||||| || |||| || | |
Sbjct 3341306 TCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCTG 3341365
Query 22583 TTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGG 22640
|||| | ||||||| |||| ||| || |||||| ||||||||| ||||| |
Sbjct 3341366 TTTCGGATACCGTGCTCCTTGATCTTTGCCTTCAAAGCATC--CCAGTCCCAGAGATCAG 3341423
Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGCC 22698
| ||| || | ||||||| || ||||| | | || |||| || | | | ||
Sbjct 3341424 AAGGCTGGAC---GCCCCACATGTCATATTGAAGCTGTCCCTGCGAGACGG-GAGATCCC 3341479
Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758
| |||| || | ||| || || | | | ||| | ||||| ||| ||| || |
Sbjct 3341480 T-CGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCAGC 3341538
Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GC----GGCGACGCTTTCG 22813
| || || ||||||||||| | ||||||| | |||| || || ||| ||
Sbjct 3341539 ATGGTAGATGGTCTCGAAGATCTGTTTGTTCAGCT-GGCGAGCCTCAGGGGAC----TCA 3341593
Query 22814 TACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGT 22873
| ||||| || | || ||| || || || | |||||| || || | ||| || ||
Sbjct 3341594 AAAGGCATGCGGAGAGCCAAGAAGGCATCAGCAAGACCCTGGACACCAACACCAATGGGC 3341653
Query 22874 CGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTT 22933
| || | || || | |||||| || || || || ||| || |
Sbjct 3341654 CTGTGTCGCATGTTGCTGTTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATC 3341713
Query 22934 CTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG 22993
|||||||||| | || | | || | | |||| ||| |
Sbjct 3341714 TTGTTCAAGTTGCGAACAACGACCTGGGTGACCTCGTGGAGATGCTGGAAGTTGTAGCAG 3341773
Query 22994 CCCGATT-GTA--CAACAAACTTGTTGACGGCG--ATCGAGGCAAGATTGCATACGGCCA 23048
|| ||| ||||| | || || | | | || ||||| || ||||| || ||||
Sbjct 3341774 TTGTTTTCGTAGTCAACATA--TGCTGGCAGAGCAATGGAGGCCAGGTTGCAGACAGCCA 3341831
Query 23049 CCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGC 23108
|||| || | |||||| | || ||||| || || ||| | || || |
Sbjct 3341832 CCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGTTC 3341891
Query 23109 CCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGC 23168
||| || |||||||||| || || ||||| | |||||||||||||||| | || |||
Sbjct 3341892 CCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGC 3341951
Query 23169 CCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCA 23228
| |||||| ||| | ||||| ||| || ||||| ||||||| | | |||
Sbjct 3341952 CGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTCATG-GTCTTG 3342010
Query 23229 CGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG 23287
|| | | ||||||| ||||||||| | ||||| || || || ||| ||||||| ||
Sbjct 3342011 CGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGCAT 3342070
Query 23288 TCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACG 23347
|| || |||||||| | | | || |||||||| |||| || || |||||
Sbjct 3342071 TCAGCAAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACC 3342130
Query 23348 CGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCC 23407
|| |||| || || || || ||||| || || ||| || |||||||| || ||||||
Sbjct 3342131 CGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAGGAAGAGGTCGCGGGCCCGGACCTCC 3342190
Query 23408 TCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCG 23467
|| || ||| ||||||| |||||| | || || || || || || ||||| |||||
Sbjct 3342191 TCCTTACCGTGGTTCTTTCGCAAATCGAGGAACTCAAAGACATCAGCGTGCCATGGCTCC 3342250
Query 23468 AGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTG 23527
||||| | || || || || || | ||| || || ||||| || ||||||||||| |||
Sbjct 3342251 AGGTAGATAGCGAAAGCACCAGGACGCTTGTTACCACCCTGGTCAACGTAACGGGCAGTG 3342310
Query 23528 TTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACA 23587
|||||| | || | ||||| || | || ||| || |||| |||| || || | |
Sbjct 3342311 TTGTTGAAGACACGAAGCATGGGAATGATACCATTTGACGTGCCGTTGGTACCGGCTATA 3342370
Query 23588 CTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGAT 23647
|| || | || || | || |||| | ||| || |||||| || || ||
Sbjct 3342371 TAAGAGCCAGTGGCGCGGATACGATGGACGTTCAGACCAATACCTCCGGCCATCTTGGAG 3342430
Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707
||||| |||||| || ||||| |||||||| ||||| |||||||| || || | ||
Sbjct 3342431 ATCATGGCGCATGTCTTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCG 3342490
Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767
|| | ||| || || |||| || | | ||| ||| | || |||||| || ||
Sbjct 3342491 ACGAGGAAGCATGACGACAGCTGAGGCTGGGGTGTACCAGCGTTGAACAGCGTAGGCGAT 3342550
Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827
||||| || || || | |||||| || ||||| || || || | || || ||
Sbjct 3342551 GCGTGTGTGAAAAATTTGTGCGACATCAGGTTGTAAGTCTCAATCACTCTCTCGATATCA 3342610
Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC- 23886
||||| ||||| | || || ||||| ||||||| || || | ||||| |||
Sbjct 3342611 TCTCCCCAGATACCAACAGCAACACGCATGATCATGTGCTGTGGCCGTTCGAC---GACT 3342667
Query 23887 --GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAG 23944
||| | | |||| || ||||| || | || || || || || || || | |||
Sbjct 3342668 TTGCCATCGAGCTTGAGGAGGTATGACCGCTCCAAGGTCTTGAAGCCGAAGTATTGGTAG 3342727
Query 23945 TTAAAGTCACGATCGTGCACTATGGCCGA 23973
||||| || || | || ||||||||
Sbjct 3342728 CCGAAGTCTCGGTCATATACAATGGCCGA 3342756
>seq1
Length=5395810
Score = 134 bits (148), Expect = 1e-26
Identities = 329/489 (67%), Gaps = 20/489 (4%)
Strand=Plus/Minus
Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG--CCACGTTCGCCGAGA 57972
|||||||| || ||| | | || ||||| | | ||||| |||| | |||| ||
Sbjct 863762 AAGAAGGCCGACTGGGCCCTGAAGTGGATCAC--GGACCACGAGTCCACCTACGCCCAGC 863705
Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATA 58031
| || | || ||||| || || || ||||| ||||| || ||||| || | ||
Sbjct 863704 GTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGT-GCTTTCGCCTCCATC 863646
Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091
|| ||| ||||||| ||||| |||||||| |||||||| || ||||||| |||| ||
Sbjct 863645 TTCTGGCTGAAGAAGCGCGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCT 863586
Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA 58151
|| ||||||||||| || || || || || ||||| ||| ||||||| | | ||
Sbjct 863585 CGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCTCACCT----GAGGAA 863530
Query 58152 CCGACGC----GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGA 58207
||| | | || ||| || | | || ||||| || || ||||| || || || ||
Sbjct 863529 CCGCCCCAGCAAGGCGCGCGTCGAGAAGATCATCACTGATGCCGTCGCCATTGAGAAGGA 863470
Query 58208 GTTTGTCACCGAAGC-CCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAA 58266
||| | || || || | | || | | | ||||||| |||||| | |||||
Sbjct 863469 GTTCCTGACTGAGGCTCTTCCCTGCAGTC-TGCTCGGCATGAACGCCAACCTGATGAAGC 863411
Query 58267 AGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTA 58324
||||||| ||||| || |||||| | || | ||| || | |||| ||| ||
Sbjct 863410 AGTACATCGAGTTCGTGGCCGACCGTCTCCTCGTCGCCCTTGGCAACGAGAAGGTC--TA 863353
Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384
||| | | || || || || || ||| | ||||| || | |||||||| |||||
Sbjct 863352 CAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTT 863293
Query 58385 TTTCGAAAA 58393
||||| ||
Sbjct 863292 CTTCGAGAA 863284
>seq5
Length=3440085
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| |||| || || | ||
Sbjct 3137598 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTC 3137657
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| | ||||| | || ||||||||| || | || || |||||
Sbjct 3137658 TGACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCA 3137717
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||| | || ||||||||||| ||| | || ||| || | ||| || ||
Sbjct 3137718 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAA 3137777
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || || || ||||| || || || | || | |||||||
Sbjct 3137778 CATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTCCGTGGCGGTA 3137827
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| || || ||||| || ||||| | || || || | |||
Sbjct 3137827 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 3137886
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | ||||| | || ||||||||| ||| | || || ||||||
Sbjct 3137887 GACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 3137946
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || || || || || ||| | || ||| || | ||| || |||
Sbjct 3137947 CAGCGCCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 3138006
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || || ||||| || |||| ||
Sbjct 3138007 ATCCAGAAGGAGTCTACTCTCCACTTGGTTCT 3138038
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || ||||| || | || || || | ||
Sbjct 3138055 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATAACACTGGAGGTGGAGTCCTCG 3138114
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || | || ||||||||| || | || || ||||||
Sbjct 3138115 GACACCATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 3138174
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || |||||||| || |||||||||||
Sbjct 3138175 CAGCGTCTCATCTTCGCTGGAAAGCAGTTGGAAGA 3138209
>seq2
Length=4895233
Score = 86.0 bits (94), Expect = 6e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || || || || |||||| | || || || | ||
Sbjct 4675368 CATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGTCCTC 4675427
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||| ||| | || ||||||||
Sbjct 4675428 GGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCA 4675487
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|||||| || || ||||| ||||| ||| | || |||
Sbjct 4675488 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 4675524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764433055760
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