Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 178 2e-39 seq1 104 3e-17 >seq3 Length=3828249 Score = 178 bits (196), Expect = 2e-39 Identities = 627/972 (65%), Gaps = 8/972 (1%) Strand=Plus/Plus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| || ||||| || || || || ||||||| || | | || | || ||||| Sbjct 3341804 GCAATGGAGGCCAGGTTGCAGACAGCCACCTCATCAGGAGCACAGTACTCGATGATCTCG 3341863 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| || || | ||| ||||| | || | || || ||||| ||| || Sbjct 3341864 GTGCACAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 3341923 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 |||||||| || || ||||| || | || || || |||| | || | || || | | Sbjct 3341924 GCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTAC 3341983 Query 63123 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTA--TAGAGTA 63179 || | | || ||||||| || | | | | |||||| ||||| | ||| Sbjct 3341984 CACA-GCTTCTGAGCCTTCATGGTCTTGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTA 3342042 Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CTAGGACATTCATCCGGACA 63238 | | | ||||||||||| || | |||| ||| | || || || | || || Sbjct 3342043 CAGAGCC--TCGAACTCGTCACCGTAG-CATTCAGCAAGGCCGGGGCACTCGTTGGGGCA 3342099 Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 ||| | | ||| || |||| | || || || ||||| ||||| ||||||||||| || Sbjct 3342100 CATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAG 3342159 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 || | || || || | | | ||||| || || |||||| | |||||| Sbjct 3342160 GGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAG 3342219 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63418 |||| | | | ||||| ||||| || |||| ||| || || | | | ||||| || || Sbjct 3342220 GAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTT 3342279 Query 63419 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63478 ||| || ||||| || | ||| | || ||||| || | || | | ||| ||||| || Sbjct 3342280 GTTACCACCCTGGTCAACGTAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGAT 3342339 Query 63479 ACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT 63538 ||| ||||| | || |||||||||| ||||| ||| |||| || ||| | | Sbjct 3342340 ACCATTTGACGTGCCGTTGGTACCGGCTATATAAGAGCCAGTGGCGCGGATACGATGGAC 3342399 Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598 ||||| || || || ||||| || ||||| | |||||| || | || || || Sbjct 3342400 GTTCAGACCAATACCTCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGAGTATCGTA 3342459 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 ||| || || ||||| ||||| |||||| | || || || |||| || | | Sbjct 3342460 GATACCCTCAATGCTGTCATCCTTCATGTCGACGAGGAAGCATGACGACAGCTGAGGCTG 3342519 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 | || || || || || | ||||| || ||||| || || |||| | || | || Sbjct 3342520 GGGTGTACCAGCGTTGAACAGCGTAGGCGATGCGTGTGTGAAAAATTTGTGCGACATCAG 3342579 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 ||||| |||||||| || || ||||| | || || || || |||||||| Sbjct 3342580 GTTGTAAGTCTCAATCACTCTCTCGATATCATCTCCCCAGATACCAACAGCAACACGCAT 3342639 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 | ||||||||| || | ||| || | |||| | | || | | ||| || || Sbjct 3342640 GATCATGTGCTGTGGCCGTTCGACGACTTTGCCATCGAGCTTGAGGAGGTATGACCGCTC 3342699 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 ||| || || || || || || | ||| |||||||| || || | ||| |||| | Sbjct 3342700 CAAGGTCTTGAAGCCGAAGTATTGGTAGCCGAAGTCTCGGTCATATACAATGGCCGAGTC 3342759 Query 63899 GAGCTTATCCTT 63910 ||||| ||||| Sbjct 3342760 GAGCTCTTCCTT 3342771 Score = 104 bits (114), Expect = 3e-17 Identities = 351/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Plus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||| | ||||| |||||||| || | || | | || || || |||||||| Sbjct 3340886 TCCTGGTCGACAGTGAACTGAATGGGCGCTGCCGCCGCCTGAGTGCGGAGGTAGTACATG 3340945 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153 || ||||| ||||| || |||| ||| || ||||| || || | ||| | | Sbjct 3340946 CCAGTTTTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGTG 3341005 Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 || || || ||||| || | ||| || || ||||||||||| || | ||| ||| Sbjct 3341006 GGCTCACGCATGTGGATGTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGCA 3341065 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273 | ||| | | |||||| | || | | |||||| | || || || | ||| ||| Sbjct 3341066 GACATCTGCACAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGATA 3341125 Query 62274 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330 || | || | | | | | ||||| || || ||| | || | ||||| | ||||| Sbjct 3341126 TCGGCCGGGATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTTC 3341185 Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || | ||| ||| | |||| || | | || || || ||||| || || Sbjct 3341186 ATAGCCTCAGACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACGACC 3341245 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 ||||| || |||| | || | || ||| || ||| ||| || || || | || Sbjct 3341246 TGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCAC 3341305 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 || || || |||| ||| || | || ||||| || ||||| ||||||| ||| || || Sbjct 3341306 TCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCTG 3341365 Query 62511 TTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCG 62568 |||| | |||| || || |||| || | || | | ||||| | ||| ||||| | Sbjct 3341366 TTTCGGATACCG--TGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAGAGATCAG 3341423 Query 62569 ACGG 62572 | || Sbjct 3341424 AAGG 3341427 >seq1 Length=5395810 Score = 104 bits (114), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || ||||| ||| ||||||||||||||| | | || | ||||| || Sbjct 863545 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 863604 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || || ||||| || ||||| || ||||| ||||| | ||| Sbjct 863605 AAGGTCAGGCCAGGCATCAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGCACCG 863664 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33749 |||||||| || || || ||||| ||||||| || | || | || || || Sbjct 863665 CTGAAGAAGATACCCTCAACAGCAGCGAAGGCAACCAGACGCTGGGCGTAGGTGGACTCG 863724 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 ||| |||||||| | ||||| ||||||||||| Sbjct 863725 TGGTCCGTGATCCACTTCAGGGCCCAGTCGGCCTTCTT 863762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814820929840