Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 178 2e-39 seq1 84.2 3e-11 >seq3 Length=3828249 Score = 178 bits (196), Expect = 2e-39 Identities = 627/972 (65%), Gaps = 8/972 (1%) Strand=Plus/Plus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 |||| || ||||| || || || || ||||||| || | | || | || ||||| Sbjct 3341804 GCAATGGAGGCCAGGTTGCAGACAGCCACCTCATCAGGAGCACAGTACTCGATGATCTCG 3341863 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 ||||| || || | ||||||||| | || | || || ||||| ||| || Sbjct 3341864 GTGCACAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 3341923 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915 |||||||| || || ||||| || | || || || |||| | || | || || | | Sbjct 3341924 GCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTAC 3341983 Query 65916 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTA--TAGTGTA 65972 || | | || ||||||| || | | | |||||| ||||| | ||| Sbjct 3341984 CACA-GCTTCTGAGCCTTCATGGTCTTGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTA 3342042 Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACA 66031 | | | ||||||||||| || | |||| ||| || || || || | || || Sbjct 3342043 CAGAGCC--TCGAACTCGTCACCGTAG-CATTCAGCAAGGCCGGGGCACTCGTTGGGGCA 3342099 Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 ||| | | ||| || |||| | || || || ||||| ||||| ||||||||||| || Sbjct 3342100 CATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAG 3342159 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 || | || | || | || | ||||| || || |||||| | |||||| Sbjct 3342160 GGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAG 3342219 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 |||| | | | |||| ||||| || |||| ||| || || | | | ||||| || || Sbjct 3342220 GAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTT 3342279 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 ||| || ||||| || | ||| | || ||||| || | || | | ||| ||||| || Sbjct 3342280 GTTACCACCCTGGTCAACGTAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGAT 3342339 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAAT 66331 |||||| || || || ||||| |||| ||||| ||| | || || ||| | | Sbjct 3342340 ACCATTTGACGTGCCGTTGGTACCGGCTATATAAGAGCCAGTGGCGCGGATACGATGGAC 3342399 Query 66332 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 66391 ||||| || || || ||||| || ||||| | |||||| || | ||||| || Sbjct 3342400 GTTCAGACCAATACCTCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGAGTATCGTA 3342459 Query 66392 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 66451 ||| ||||| || || |||||| |||||| | || || || |||| || | | Sbjct 3342460 GATACCCTCAATGCTGTCATCCTTCATGTCGACGAGGAAGCATGACGACAGCTGAGGCTG 3342519 Query 66452 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 66511 || || || || || | ||||| || ||||| || || |||| | || | || Sbjct 3342520 GGGTGTACCAGCGTTGAACAGCGTAGGCGATGCGTGTGTGAAAAATTTGTGCGACATCAG 3342579 Query 66512 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 66571 ||||| |||||||| || || ||||| | || || || || |||||||| Sbjct 3342580 GTTGTAAGTCTCAATCACTCTCTCGATATCATCTCCCCAGATACCAACAGCAACACGCAT 3342639 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 | ||||||||| || | ||| |||| ||| | | || | | ||| || || Sbjct 3342640 GATCATGTGCTGTGGCCGTTCGACGACTTTGCCATCGAGCTTGAGGAGGTATGACCGCTC 3342699 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 ||| || || || || || || | ||| |||||||| || || | ||| |||||| Sbjct 3342700 CAAGGTCTTGAAGCCGAAGTATTGGTAGCCGAAGTCTCGGTCATATACAATGGCCGAGTC 3342759 Query 66692 GAGTTTATCCTT 66703 ||| | ||||| Sbjct 3342760 GAGCTCTTCCTT 3342771 Score = 104 bits (114), Expect = 3e-17 Identities = 351/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Plus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 |||| ||| | ||||| |||||||| || | || | | || || || |||||||| Sbjct 3340886 TCCTGGTCGACAGTGAACTGAATGGGCGCTGCCGCCGCCTGAGTGCGGAGGTAGTACATG 3340945 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 64946 || ||||| ||||| || |||| ||| || ||||| || || | ||| | | Sbjct 3340946 CCAGTTTTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGTG 3341005 Query 64947 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006 || || || ||||| || | ||| || || ||||||||||| || | ||| ||| Sbjct 3341006 GGCTCACGCATGTGGATGTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGCA 3341065 Query 65007 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 65066 | ||| | | |||||| | || | | |||||| | || || || | ||| ||| Sbjct 3341066 GACATCTGCACAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGATA 3341125 Query 65067 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123 || | || | | | | | ||||| || || ||| | || || ||||| | ||||| Sbjct 3341126 TCGGCCGGGATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTTC 3341185 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || | ||| ||| | |||| || | | || || || || || || || Sbjct 3341186 ATAGCCTCAGACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACGACC 3341245 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || || || |||| | || | || ||| || ||| ||| || || || | || Sbjct 3341246 TGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCAC 3341305 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303 || || || |||| ||| || | || ||||| || ||||| ||||||| ||| || || Sbjct 3341306 TCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCTG 3341365 Query 65304 TTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 65361 |||| | |||| || || |||| || | || | || ||||| | ||| ||||| | Sbjct 3341366 TTTCGGATACCG--TGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAGAGATCAG 3341423 Query 65362 ACGG 65365 | || Sbjct 3341424 AAGG 3341427 >seq1 Length=5395810 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/219 (69%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| || || ||||| ||| ||| ||||||||||| | | || | |||||||| Sbjct 863545 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 863604 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || || || ||||| || || ||||| || ||||| || ||||| || || | || Sbjct 863605 AAGGTCAGGCCAGGCATCAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGCACCG 863664 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 36327 ||||| || || || || || || ||||||| || | || | || || ||| Sbjct 863665 CTGAAGAAGATACCCTCAACAGCAGCGAAGGCAACCAGACGCTGGGCGTAGGTGG-ACTC 863723 Query 36328 ---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 ||| |||||||| | ||||| ||||||||||| Sbjct 863724 GTGGTCCGTGATCCACTTCAGGGCCCAGTCGGCCTTCTT 863762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169895812520