Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 197 2e-45 seq1 107 3e-18 >seq3 Length=3828249 Score = 197 bits (218), Expect = 2e-45 Identities = 629/968 (65%), Gaps = 12/968 (1%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || ||||| || || || || ||||||| || | | || | || || || ||||| Sbjct 3341810 GAGGCCAGGTTGCAGACAGCCACCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCAC 3341869 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 ||||| | |||||||| | || | || || ||||| ||| || |||||| Sbjct 3341870 AGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCC 3341929 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || || || ||||| || | || || || |||| | || | || || | ||| | | Sbjct 3341930 TTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACA-G 3341988 Query 79801 ACTC-GAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTTTCGTA-TTGT-GTATAT 79854 || ||||||| || | |||| | |||||| ||||| || | ||| | Sbjct 3341989 CTTCTGAGCCTTCATGGT---CTTGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAG 3342045 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 | | ||||||||||| || | || | | || || || |||| || ||||| Sbjct 3342046 AGCC--TCGAACTCGTCACCGTAGCATTCAGCAAGGCCGGGGCACTCGTTGGGGCACATG 3342103 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 | | ||| || || | | || || || ||||| ||||| ||||||||||| || || Sbjct 3342104 AGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCA 3342163 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 | || || || | || | |||||| || || |||||| | |||||||||| Sbjct 3342164 AGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAGGAAC 3342223 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | | ||||| ||||| || |||| ||| || || | | | || || || ||||| Sbjct 3342224 TCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTTGTTA 3342283 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || ||||| || | ||| | || ||||| || | || | | ||| ||||| |||||| Sbjct 3342284 CCACCCTGGTCAACGTAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATACCA 3342343 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || || || || ||||| |||| ||||| ||| |||| || ||| | | Sbjct 3342344 TTTGACGTGCCGTTGGTACCGGCTATATAAGAGCCAGTGGCGCGGATACGATGGACGTTC 3342403 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 ||||| || || || ||||| || ||||| | |||||| || | ||||| ||||| Sbjct 3342404 AGACCAATACCTCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGAGTATCGTAGATA 3342463 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 ||||| ||||| ||||| |||||| | || || || |||| || | | Sbjct 3342464 CCCTCAATGCTGTCATCCTTCATGTCGACGAGGAAGCATGACGACAGCTGAGGCTGGGGT 3342523 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | ||||| || ||||| || || |||| | |||| || ||| Sbjct 3342524 GTACCAGCGTTGAACAGCGTAGGCGATGCGTGTGTGAAAAATTTGTGCGACATCAGGTTG 3342583 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||||||| || || ||||| | || || || || |||||||| | | Sbjct 3342584 TAAGTCTCAATCACTCTCTCGATATCATCTCCCCAGATACCAACAGCAACACGCATGATC 3342643 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 |||||||| || | ||| |||| ||| || | || | | ||| || ||||| Sbjct 3342644 ATGTGCTGTGGCCGTTCGACGACTTTGCCATCGAGCTTGAGGAGGTATGACCGCTCCAAG 3342703 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 80574 || || || || || || | ||| |||||||| || || | ||| |||||| ||| Sbjct 3342704 GTCTTGAAGCCGAAGTATTGGTAGCCGAAGTCTCGGTCATATACAATGGCCGAGTCGAGC 3342763 Query 80575 TTATCCTT 80582 | ||||| Sbjct 3342764 TCTTCCTT 3342771 Score = 118 bits (130), Expect = 2e-21 Identities = 354/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Plus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||| | ||||| |||||||| || | || | | || || || |||||||| Sbjct 3340886 TCCTGGTCGACAGTGAACTGAATGGGCGCTGCCGCCGCCTGAGTGCGGAGGTAGTACATG 3340945 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTC 78825 || ||||| ||||| || |||| ||| ||| ||||| || || | ||| | | Sbjct 3340946 CCAGTTTTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGTG 3341005 Query 78826 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885 || || || ||||| || | ||| || || ||||||||||| || | ||| ||| Sbjct 3341006 GGCTCACGCATGTGGATGTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGCA 3341065 Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 78945 | ||| | | |||||| | || | | |||||| | || || || | ||| ||| Sbjct 3341066 GACATCTGCACAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGATA 3341125 Query 78946 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 || | || | | | | | ||||| || || ||| | || || ||||| | ||||| Sbjct 3341126 TCGGCCGGGATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTTC 3341185 Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || | ||| ||| | |||| || | | || || || || || || || Sbjct 3341186 ATAGCCTCAGACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACGACC 3341245 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || || || |||| | || | || ||| || ||| ||| ||||| || | | Sbjct 3341246 TGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCAC 3341305 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 || || || |||| ||| || | || ||||| || ||||| ||||||| ||| || || Sbjct 3341306 TCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCTG 3341365 Query 79183 TTTCTAAGACCGTATGATC--TGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAG 79240 |||| | |||| || || |||| || | || | || ||||| ||||| ||||||| Sbjct 3341366 TTTCGGATACCG--TGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAGAGATCAG 3341423 Query 79241 ACGG 79244 | || Sbjct 3341424 AAGG 3341427 >seq1 Length=5395810 Score = 107 bits (118), Expect = 3e-18 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || ||||| ||| ||||||||||||||| | | || || |||||||| Sbjct 863545 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 863604 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || || ||||| || || ||||| || ||||| || ||||| || || | || Sbjct 863605 AAGGTCAGGCCAGGCATCAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGCACCG 863664 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127 |||||||| || || || || || |||||||| || | || | || ||| || Sbjct 863665 CTGAAGAAGATACCCTCAACAGCAGCGAAGGCAACCAGACGCTGGGCGTAGGTGGACTCG 863724 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 ||| |||||||| | ||||| ||||||||||| Sbjct 863725 TGGTCCGTGATCCACTTCAGGGCCCAGTCGGCCTTCTT 863762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265630638920