Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 seq1 84.2 3e-11 >seq3 Length=3828249 Score = 187 bits (206), Expect = 3e-42 Identities = 632/973 (65%), Gaps = 10/973 (1%) Strand=Plus/Plus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| || ||||| || || || || ||||||| || | | || | || || || Sbjct 3341804 GCAATGGAGGCCAGGTTGCAGACAGCCACCTCATCAGGAGCACAGTACTCGATGATCTCG 3341863 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 ||||| || || | ||||||||| | || | || || ||||| ||| || Sbjct 3341864 GTGCACAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 3341923 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 |||||||| || || || || || | || || || |||| | || | || || | | Sbjct 3341924 GCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTAC 3341983 Query 71878 CAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTA-TTGT-GTA 71934 || | | || ||||||| || | || | | |||||| ||||| || | ||| Sbjct 3341984 CACA-GCTTCTGAGCCTTCATGGTCTTGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTA 3342042 Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT-CCAGGACATTCATTCGGACA 71993 | | | ||||||||||| || | ||||| || || || || || || || || Sbjct 3342043 CAGAGCC--TCGAACTCGTCACCGTA-GCATTCAGCAAGGCCGGGGCACTCGTTGGGGCA 3342099 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 ||| | | ||| || || | | | || || ||||| ||||| ||||||||||| || Sbjct 3342100 CATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAG 3342159 Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 || | || || || | || | |||||| || || |||||| | |||||| Sbjct 3342160 GGCAAGGAAGAGGTCGCGGGCCCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAATCGAG 3342219 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTT 72173 |||| | | | ||||| ||||| || |||| ||| || || | | | || || || || Sbjct 3342220 GAACTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTT 3342279 Query 72174 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 72233 ||| || ||||| || | ||| | || ||||| || | || | | ||| ||||| || Sbjct 3342280 GTTACCACCCTGGTCAACGTAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGAT 3342339 Query 72234 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT 72293 |||||| || | || ||||| |||| ||||| ||| |||| || ||| | | Sbjct 3342340 ACCATTTGACGTGCCGTTGGTACCGGCTATATAAGAGCCAGTGGCGCGGATA-CGATGGA 3342398 Query 72294 TGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 72352 | | ||||| || || || ||||| || ||||| | |||||| || | ||||| | Sbjct 3342399 CGTTCAGACCAATACCTCCGGCCATCTTGGAGATCATGGCGCATGTCTTGAGAGTATCGT 3342458 Query 72353 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 72412 |||| ||||| || || |||||| |||||| | || || || |||| || | Sbjct 3342459 AGATACCCTCAATGCTGTCATCCTTCATGTCGACGAGGAAGCATGACGACAGCTGAGGCT 3342518 Query 72413 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 72472 | || || || || || | ||||| || ||||| || || |||| | |||| | Sbjct 3342519 GGGGTGTACCAGCGTTGAACAGCGTAGGCGATGCGTGTGTGAAAAATTTGTGCGACATCA 3342578 Query 72473 GATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCA 72532 | ||||| |||||||| || || ||||| | || || || || ||||||| Sbjct 3342579 GGTTGTAAGTCTCAATCACTCTCTCGATATCATCTCCCCAGATACCAACAGCAACACGCA 3342638 Query 72533 TTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTT 72592 | | ||| ||||| || | ||| |||| ||| || | || | | ||| || | Sbjct 3342639 TGATCATGTGCTGTGGCCGTTCGACGACTTTGCCATCGAGCTTGAGGAGGTATGACCGCT 3342698 Query 72593 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 72652 |||| || || || || || || | ||| |||||||| || || | ||| |||| | Sbjct 3342699 CCAAGGTCTTGAAGCCGAAGTATTGGTAGCCGAAGTCTCGGTCATATACAATGGCCGAGT 3342758 Query 72653 TGAGTTTATCCTT 72665 ||| | ||||| Sbjct 3342759 CGAGCTCTTCCTT 3342771 Score = 104 bits (114), Expect = 3e-17 Identities = 353/545 (65%), Gaps = 9/545 (2%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || ||||||||||| | | || || | || || || ||||||||| Sbjct 3340886 TCCTGGTCGACAGTGAACTGAATGGGCGCTGCCGCCGCCTGAGTGCGGAGGTAGTACATG 3340945 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || ||||| ||||| || |||| ||| || ||||| || || | ||| |||| | Sbjct 3340946 CCAGTTTTGAGACCCAGCTTCCAGCCGGTGAAGTGCATGCTAGTGATCTTGCCCATAG-T 3341004 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || || ||||| || || | ||||| || ||||||||||| || | ||| || Sbjct 3341005 GGGCTCACGCATGTGGATGTTGAGAGACTGCGACTGGTCGATGAAGGCACCACGGTCAGC 3341064 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 || ||| | | |||||| | || | | |||||| | || || || | ||| || Sbjct 3341065 AGACATCTGCACAATCGTCCTCTGGGAGACTTCCCAGACGGTCTTGTACAAAGCCTTGAT 3341124 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 ||| | || | | | | | ||||| || || ||| | || |||||||| | || || Sbjct 3341125 ATCGGCCGGGATGCTGGGGATGTTCTGGATAGAACCATCTTCGGCAATAATACGGTTCTT 3341184 Query 71085 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTAC 71144 || | ||| ||| | |||| || | | || || || || || || || Sbjct 3341185 CATAGCCTCAGACCACAGACCAATCTCTGTCAGGTCCCTGAGTAGCCAGGGGTTGACGAC 3341244 Query 71145 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204 || || || |||| | || | || ||| || ||| ||| || || || | | Sbjct 3341245 CTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGCTCGAAGCA 3341304 Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264 ||| || || |||| ||| || | || ||||| || ||||| ||||||| ||| | || Sbjct 3341305 CTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGTGCCATCAACAAGCT 3341364 Query 71265 ATTTCTAAGACCATGTGATC--GGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCC 71322 |||| | ||| ||| || ||| || | || | || ||||| | ||| ||||| Sbjct 3341365 GTTTCGGATACC--GTGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAGAGATCA 3341422 Query 71323 GATGG 71327 || || Sbjct 3341423 GAAGG 3341427 >seq1 Length=5395810 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/219 (69%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || ||||| ||| |||||||||||| || | | || | |||||||| Sbjct 863545 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 863604 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| || || ||||| || ||||| || || || || || | || Sbjct 863605 AAGGTCAGGCCAGGCATCAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAAGCACCG 863664 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234 |||||||| || || || || || ||||||| || | || | || || ||| Sbjct 863665 CTGAAGAAGATACCCTCAACAGCAGCGAAGGCAACCAGACGCTGGGCGTAGGTGG-ACTC 863723 Query 42235 ---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 ||| |||||||| | ||||| ||||||||||| Sbjct 863724 GTGGTCCGTGATCCACTTCAGGGCCCAGTCGGCCTTCTT 863762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136238598280