Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 163 4e-35 seq1 149 9e-31 >seq3 Length=3828249 Score = 163 bits (180), Expect = 4e-35 Identities = 337/496 (68%), Gaps = 4/496 (1%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||| || || || || || || ||| | || ||||| |||| || Sbjct 3342303 CGTTACGTTGACCAGGGTGGTAACAAGCGTCCTGGTGCTTTCGCTATCTACCTGGAGCCA 3342244 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || ||||| || |||| |||| || ||| || || |||| Sbjct 3342243 TGGCACGCTGATGTCTTTGAGTTCCTCGATTTGCGAAAGAACCACGGTAAGGAGGAGGTC 3342184 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || ||| | ||| | || ||| |||||| | || || | ||||||||||| || | Sbjct 3342183 CGGGCCCGCGACCTCTTCCTTGCCCTCTGGATTCCTGACCTCTTCATGAAGCGGGTTGAG 3342124 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| |||||| ||| ||||||||| || || ||||| || | || |||| Sbjct 3342123 AAGAACGGCGACTGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTTGCTGAATGCTAC 3342064 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACG 97162 || || ||||| ||||| |||| | |||||| ||| ||||| || |||| Sbjct 3342063 GGTGACGAGTTCGAGGCTCTGTACGAGAAGTACGAGAGAGAAGGCCGCGGCCGCAAGACC 3342004 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | | | || | |||| |||||| | |||||| | ||| ||| ||||| || | | Sbjct 3342003 A-TGAAGGCTC-AGAAGCTGTGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACC 3341946 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| |||||||||||| || || ||||| |||||||| || |||| |||| Sbjct 3341945 CCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCA 3341886 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 || ||||||| |||||||| || || | |||||| |||| || ||| ||| | Sbjct 3341885 TCCGCAGCTCCAACCTGTGCACCGAGATCATCGAGTACTGTGCTCCTGATGAGGTGGCTG 3341826 Query 97342 TTTGCGTTCTGGCATC 97357 | ||| ||||| || Sbjct 3341825 TCTGCAACCTGGCCTC 3341810 >seq1 Length=5395810 Score = 149 bits (164), Expect = 9e-31 Identities = 336/500 (67%), Gaps = 19/500 (4%) Strand=Plus/Minus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || ||||| ||||| | |||| | ||||||| ||| || |||| | |||||| Sbjct 863768 ATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGTCCACCTACGCC 863709 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | ||||| || ||||| || || ||||| |||||||| ||| ||| || || Sbjct 863708 CAGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCC 863649 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||| ||||||||||| || ||||| || ||||| | |||||| | || Sbjct 863648 ATCTTCTGGCTGAAGAAGCGCGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGCTGATC 863589 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGC 125598 ||||| |||||||| || ||| ||||| ||| || ||||| || || || | | Sbjct 863588 TCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCTCACCTGAGGAAC 863529 Query 125599 GTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGA 125658 ||| | ||| | ||| || ||| ||||| || |||||||| | Sbjct 863528 CGCCCCA--GCAAGGCGCGCGTCGAGAAGATCATC---------ACTGATGCCGTCGCCA 863480 Query 125659 TAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGC 125718 | || | ||||| || || || | || || ||| || | ||||||||| ||| | Sbjct 863479 TTGAGAAGGAGTTCCTGACTGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCAACC 863420 Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG 125776 | ||| ||||||| ||||| ||||| || ||||| || || ||||| || Sbjct 863419 TGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCT---CGTCGCCCTTGGCAACG 863363 Query 125777 -CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835 ||| | ||||| ||| || ||||| || |||||| | ||| || || | || | Sbjct 863362 AGAAGGTCTACAAGTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCA 863303 Query 125836 AGACCAACTTTTTCGAGAAG 125855 |||||||||| ||||||||| Sbjct 863302 AGACCAACTTCTTCGAGAAG 863283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055930076280