Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20[genbank_20GCA_5F000818155.1_202015-01-20] 353 sequences; 44,725,953 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 105 2e-17 seq2 91.5 3e-13 >seq5 Length=3440085 Score = 105 bits (116), Expect = 2e-17 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || |||||||| || || | || ||||| | || |||||| Sbjct 3138251 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCATCTTCCAACTGCTTTCCA 3138192 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | ||| || || || || || || || || ||||||||| ||||| || Sbjct 3138191 GCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGAATC-TTGCTCTT 3138133 Query 104482 TACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | ||| || | ||| || ||||| ||||| || ||||| || || | || Sbjct 3138132 CACGTTGTCGATGGTGTC-CGAGGACTCCACCTCCAGTGTTATCGTCTTTCCCGTCAATG 3138074 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || |||||||| Sbjct 3138073 TCTTGACGAAGATCTGCAT 3138055 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || ||| Sbjct 3137795 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 3137736 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || |||||||| ||||| || || ||||||||||| | || Sbjct 3137735 GCGAAGATCAAACGCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGACTTG 3137676 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || ||||| || || || ||||| ||||| || || Sbjct 3137675 ACGTTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 3137616 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3137615 TTCACGAAGATCTGCAT 3137599 >seq2 Length=4895233 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || || || | ||||| || || || || || || || Sbjct 4675559 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 4675500 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || || || || || || || ||||||||||| | || ||||| Sbjct 4675499 ATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 4675440 Query 104489 TCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||| || | ||| || ||||| || || || ||||| || || || || || || Sbjct 4675439 TCGATGGTGTC-CGAGGACTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGAC 4675381 Query 104548 AAATATCTGCAT 104559 || |||||||| Sbjct 4675380 GAAGATCTGCAT 4675369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393192440924